| blob | 98f24c891b9a37fbaa5e58e707c049080f3a7a1c |
2 use strict;
3 use lib 't/lib';
5 use Test::More;
6 use SGN::Test::WWW::WebDriver;
7 use JSON::Any;
8 use Data::Dumper;
10 my $d = SGN::Test::WWW::WebDriver->new();
11 my $j = JSON::Any->new();
13 #Authentication
15 $d->get_ok('/brapi/v1/token?grant_type=wrongtype&username=johndoe&password=secretpw');
16 ok($d->driver->get_page_source()=~/Grant Type Not Supported/, "authentication call bad grant type");
18 $d->get_ok('/brapi/v1/token?grant_type=password&username=johndoe&password=wrong');
19 ok($d->driver->get_page_source()=~/Incorrect Password/, "authentication call bad password");
21 $d->get_ok('/brapi/v1/token?grant_type=password&username=janedoe&password=secretpw');
22 my $json_response = $d->find_element_ok('body', 'tag_name', "find body")->get_text();
23 my $auth = $j->jsonToObj($json_response);
24 my $session_token = $auth->{session_token};
27 #Germplasm
29 #Germplasm Search by Name
31 $d->get_ok('/brapi/v1/germplasm?name=test*&matchMethod=wildcard&session_token='.$session_token);
32 $json_response = $d->find_element_ok('body', 'tag_name', "find body")->get_text();
33 my $germplasm = $j->jsonToObj($json_response);
34 #print STDERR Dumper $germplasm;
35 is_deeply($germplasm, {
36 'metadata' => {
37 'status' => [],
38 'pagination' => {
39 'totalCount' => '10',
40 'currentPage' => 1,
41 'totalPages' => 1,
42 'pageSize' => 20
43 }
44 },
45 'result' => {
46 'data' => [
47 {
48 'pedigree' => undef,
49 'germplasmName' => 'test_accession1',
50 'defaultDisplayName' => 'test_accession1',
51 'synonyms' => [],
52 'seedSource' => '',
53 'germplasmDbId' => 38840,
54 'accessionNumber' => '',
55 'germplasmPUI' => 'test_accession1'
56 },
57 {
58 'pedigree' => undef,
59 'germplasmName' => 'test_accession2',
60 'defaultDisplayName' => 'test_accession2',
61 'synonyms' => [],
62 'seedSource' => '',
63 'germplasmDbId' => 38841,
64 'accessionNumber' => '',
65 'germplasmPUI' => 'test_accession2'
66 },
67 {
68 'pedigree' => undef,
69 'germplasmName' => 'test_accession3',
70 'defaultDisplayName' => 'test_accession3',
71 'synonyms' => [],
72 'seedSource' => '',
73 'germplasmDbId' => 38842,
74 'accessionNumber' => '',
75 'germplasmPUI' => 'test_accession3'
76 },
77 {
78 'pedigree' => undef,
79 'germplasmName' => 'test_accession4',
80 'defaultDisplayName' => 'test_accession4',
81 'synonyms' => [],
82 'seedSource' => '',
83 'germplasmDbId' => 38843,
84 'accessionNumber' => '',
85 'germplasmPUI' => 'test_accession4'
86 },
87 {
88 'pedigree' => undef,
89 'germplasmName' => 'test_accession5',
90 'defaultDisplayName' => 'test_accession5',
91 'synonyms' => [],
92 'seedSource' => '',
93 'germplasmDbId' => 38844,
94 'accessionNumber' => '',
95 'germplasmPUI' => 'test_accession5'
96 },
97 {
98 'pedigree' => 'test_accession4/test_accession5',
99 'germplasmName' => 'test5P001',
100 'defaultDisplayName' => 'test5P001',
101 'synonyms' => [],
102 'seedSource' => '',
103 'germplasmDbId' => 38873,
104 'accessionNumber' => '',
105 'germplasmPUI' => 'test5P001'
106 },
107 {
108 'pedigree' => 'test_accession4/test_accession5',
109 'germplasmName' => 'test5P002',
110 'defaultDisplayName' => 'test5P002',
111 'synonyms' => [],
112 'seedSource' => '',
113 'germplasmDbId' => 38874,
114 'accessionNumber' => '',
115 'germplasmPUI' => 'test5P002'
116 },
117 {
118 'pedigree' => 'test_accession4/test_accession5',
119 'germplasmName' => 'test5P003',
120 'defaultDisplayName' => 'test5P003',
121 'synonyms' => [],
122 'seedSource' => '',
123 'germplasmDbId' => 38875,
124 'accessionNumber' => '',
125 'germplasmPUI' => 'test5P003'
126 },
127 {
128 'pedigree' => 'test_accession4/test_accession5',
129 'germplasmName' => 'test5P004',
130 'defaultDisplayName' => 'test5P004',
131 'synonyms' => [],
132 'seedSource' => '',
133 'germplasmDbId' => 38876,
134 'accessionNumber' => '',
135 'germplasmPUI' => 'test5P004'
136 },
137 {
138 'pedigree' => 'test_accession4/test_accession5',
139 'germplasmName' => 'test5P005',
140 'defaultDisplayName' => 'test5P005',
141 'synonyms' => [],
142 'seedSource' => '',
143 'germplasmDbId' => 38877,
144 'accessionNumber' => '',
145 'germplasmPUI' => 'test5P005'
146 }
147 ]
148 }
149 }, 'germplasm test');
151 #Germplasm Details by germplasmId
153 $d->get_ok('/brapi/v1/germplasm/38843?session_token='.$session_token);
154 $json_response = $d->find_element_ok('body', 'tag_name', "find body")->get_text();
155 my $germplasm_detail = $j->jsonToObj($json_response);
156 #print STDERR Dumper $germplasm_detail;
158 is_deeply($germplasm_detail, {
159 'metadata' => {
160 'status' => [],
161 'pagination' => {
162 'totalCount' => 1,
163 'currentPage' => 1,
164 'totalPages' => 1,
165 'pageSize' => 20
166 }
167 },
168 'result' => {
169 'pedigree' => undef,
170 'germplasmName' => 'test_accession4',
171 'defaultDisplayName' => 'test_accession4',
172 'synonyms' => [],
173 'seedSource' => '',
174 'germplasmDbId' => '38843',
175 'accessionNumber' => 'test_accession4',
176 'germplasmPUI' => 'test_accession4'
177 }
178 }, 'germplasm detail test');
183 #Germplasm MCPD
185 #$d->get_ok('/brapi/v1/germplasm/38843/MCPD');
186 #ok($d->driver->get_page_source()=~/test_accession4/, "germplasm MCPD detail call");
188 #Germplasm Details List by StudyId
190 $d->get_ok('/brapi/v1/studies/139/germplasm?session_token='.$session_token);
191 $json_response = $d->find_element_ok('body', 'tag_name', "find body")->get_text();
192 my $studies_germplasm = $j->jsonToObj($json_response);
193 #print STDERR Dumper $studies_germplasm;
195 is_deeply($studies_germplasm, {
196 'metadata' => {
197 'status' => [],
198 'pagination' => {
199 'totalCount' => 374,
200 'currentPage' => 1,
201 'totalPages' => 19,
202 'pageSize' => 20
203 }
204 },
205 'result' => {
206 'studyName' => 'Kasese solgs trial',
207 'data' => [
208 {
209 'pedigree' => undef,
210 'studyEntryNumberId' => '',
211 'germplasmName' => 'UG120001',
212 'synonyms' => [],
213 'defaultDisplayName' => 'UG120001',
214 'seedSource' => '',
215 'germplasmDbId' => 38878,
216 'accessionNumber' => 'UG120001',
217 'germplasmPUI' => 'UG120001'
218 },
219 {
220 'pedigree' => undef,
221 'studyEntryNumberId' => '',
222 'germplasmName' => 'UG120002',
223 'synonyms' => [],
224 'defaultDisplayName' => 'UG120002',
225 'seedSource' => '',
226 'germplasmDbId' => 38879,
227 'accessionNumber' => 'UG120002',
228 'germplasmPUI' => 'UG120002'
229 },
230 {
231 'pedigree' => undef,
232 'studyEntryNumberId' => '',
233 'germplasmName' => 'UG120003',
234 'synonyms' => [],
235 'defaultDisplayName' => 'UG120003',
236 'seedSource' => '',
237 'germplasmDbId' => 38880,
238 'accessionNumber' => 'UG120003',
239 'germplasmPUI' => 'UG120003'
240 },
241 {
242 'pedigree' => undef,
243 'studyEntryNumberId' => '',
244 'germplasmName' => 'UG120004',
245 'synonyms' => [],
246 'defaultDisplayName' => 'UG120004',
247 'seedSource' => '',
248 'germplasmDbId' => 38881,
249 'accessionNumber' => 'UG120004',
250 'germplasmPUI' => 'UG120004'
251 },
252 {
253 'pedigree' => undef,
254 'studyEntryNumberId' => '',
255 'germplasmName' => 'UG120005',
256 'synonyms' => [],
257 'defaultDisplayName' => 'UG120005',
258 'seedSource' => '',
259 'germplasmDbId' => 38882,
260 'accessionNumber' => 'UG120005',
261 'germplasmPUI' => 'UG120005'
262 },
263 {
264 'pedigree' => undef,
265 'studyEntryNumberId' => '',
266 'germplasmName' => 'UG120006',
267 'synonyms' => [],
268 'defaultDisplayName' => 'UG120006',
269 'seedSource' => '',
270 'germplasmDbId' => 38883,
271 'accessionNumber' => 'UG120006',
272 'germplasmPUI' => 'UG120006'
273 },
274 {
275 'pedigree' => undef,
276 'studyEntryNumberId' => '',
277 'germplasmName' => 'UG120007',
278 'synonyms' => [],
279 'defaultDisplayName' => 'UG120007',
280 'seedSource' => '',
281 'germplasmDbId' => 38884,
282 'accessionNumber' => 'UG120007',
283 'germplasmPUI' => 'UG120007'
284 },
285 {
286 'pedigree' => undef,
287 'studyEntryNumberId' => '',
288 'germplasmName' => 'UG120008',
289 'synonyms' => [],
290 'defaultDisplayName' => 'UG120008',
291 'seedSource' => '',
292 'germplasmDbId' => 38885,
293 'accessionNumber' => 'UG120008',
294 'germplasmPUI' => 'UG120008'
295 },
296 {
297 'pedigree' => undef,
298 'studyEntryNumberId' => '',
299 'germplasmName' => 'UG120009',
300 'synonyms' => [],
301 'defaultDisplayName' => 'UG120009',
302 'seedSource' => '',
303 'germplasmDbId' => 38886,
304 'accessionNumber' => 'UG120009',
305 'germplasmPUI' => 'UG120009'
306 },
307 {
308 'pedigree' => undef,
309 'studyEntryNumberId' => '',
310 'germplasmName' => 'UG120010',
311 'synonyms' => [],
312 'defaultDisplayName' => 'UG120010',
313 'seedSource' => '',
314 'germplasmDbId' => 38887,
315 'accessionNumber' => 'UG120010',
316 'germplasmPUI' => 'UG120010'
317 },
318 {
319 'pedigree' => undef,
320 'studyEntryNumberId' => '',
321 'germplasmName' => 'UG120011',
322 'synonyms' => [],
323 'defaultDisplayName' => 'UG120011',
324 'seedSource' => '',
325 'germplasmDbId' => 38888,
326 'accessionNumber' => 'UG120011',
327 'germplasmPUI' => 'UG120011'
328 },
329 {
330 'pedigree' => undef,
331 'studyEntryNumberId' => '',
332 'germplasmName' => 'UG120012',
333 'synonyms' => [],
334 'defaultDisplayName' => 'UG120012',
335 'seedSource' => '',
336 'germplasmDbId' => 38889,
337 'accessionNumber' => 'UG120012',
338 'germplasmPUI' => 'UG120012'
339 },
340 {
341 'pedigree' => undef,
342 'studyEntryNumberId' => '',
343 'germplasmName' => 'UG120013',
344 'synonyms' => [],
345 'defaultDisplayName' => 'UG120013',
346 'seedSource' => '',
347 'germplasmDbId' => 38890,
348 'accessionNumber' => 'UG120013',
349 'germplasmPUI' => 'UG120013'
350 },
351 {
352 'pedigree' => undef,
353 'studyEntryNumberId' => '',
354 'germplasmName' => 'UG120014',
355 'synonyms' => [],
356 'defaultDisplayName' => 'UG120014',
357 'seedSource' => '',
358 'germplasmDbId' => 38891,
359 'accessionNumber' => 'UG120014',
360 'germplasmPUI' => 'UG120014'
361 },
362 {
363 'pedigree' => undef,
364 'studyEntryNumberId' => '',
365 'germplasmName' => 'UG120015',
366 'synonyms' => [],
367 'defaultDisplayName' => 'UG120015',
368 'seedSource' => '',
369 'germplasmDbId' => 38892,
370 'accessionNumber' => 'UG120015',
371 'germplasmPUI' => 'UG120015'
372 },
373 {
374 'pedigree' => undef,
375 'studyEntryNumberId' => '',
376 'germplasmName' => 'UG120016',
377 'synonyms' => [],
378 'defaultDisplayName' => 'UG120016',
379 'seedSource' => '',
380 'germplasmDbId' => 38893,
381 'accessionNumber' => 'UG120016',
382 'germplasmPUI' => 'UG120016'
383 },
384 {
385 'pedigree' => undef,
386 'studyEntryNumberId' => '',
387 'germplasmName' => 'UG120017',
388 'synonyms' => [],
389 'defaultDisplayName' => 'UG120017',
390 'seedSource' => '',
391 'germplasmDbId' => 38894,
392 'accessionNumber' => 'UG120017',
393 'germplasmPUI' => 'UG120017'
394 },
395 {
396 'pedigree' => undef,
397 'studyEntryNumberId' => '',
398 'germplasmName' => 'UG120018',
399 'synonyms' => [],
400 'defaultDisplayName' => 'UG120018',
401 'seedSource' => '',
402 'germplasmDbId' => 38895,
403 'accessionNumber' => 'UG120018',
404 'germplasmPUI' => 'UG120018'
405 },
406 {
407 'pedigree' => undef,
408 'studyEntryNumberId' => '',
409 'germplasmName' => 'UG120019',
410 'synonyms' => [],
411 'defaultDisplayName' => 'UG120019',
412 'seedSource' => '',
413 'germplasmDbId' => 38896,
414 'accessionNumber' => 'UG120019',
415 'germplasmPUI' => 'UG120019'
416 },
417 {
418 'pedigree' => undef,
419 'studyEntryNumberId' => '',
420 'germplasmName' => 'UG120020',
421 'synonyms' => [],
422 'defaultDisplayName' => 'UG120020',
423 'seedSource' => '',
424 'germplasmDbId' => 38897,
425 'accessionNumber' => 'UG120020',
426 'germplasmPUI' => 'UG120020'
427 }
428 ],
429 'studyDbId' => '139'
430 }
431 }, 'study germplasm test');
433 #Germplasm Pedigree
435 $d->get_ok('/brapi/v1/germplasm/38846/pedigree?session_token='.$session_token);
436 $json_response = $d->find_element_ok('body', 'tag_name', "find body")->get_text();
437 my $germplasm_pedigree = $j->jsonToObj($json_response);
438 #print STDERR Dumper $germplasm_pedigree;
440 is_deeply($germplasm_pedigree, {
441 'metadata' => {
442 'status' => [],
443 'pagination' => {
444 'totalCount' => 1,
445 'currentPage' => 1,
446 'totalPages' => 1,
447 'pageSize' => 20
448 }
449 },
450 'result' => {
451 'pedigree' => 'test_accession4/test_accession5',
452 'parent2Id' => 38844,
453 'germplasmDbId' => '38846',
454 'parent1Id' => 38843
455 }
456 }, 'germplasm pedigree test');
458 #Germplasm Markerprofiles
460 #$d->get_ok('/brapi/v1/germplasm/39024/markerprofiles?session_token='.$session_token);
461 #my $json_response = $d->find_element_ok('body', 'tag_name', "find body")->get_text();
462 #my $germplasm_markerprofiles = $j->jsonToObj($json_response);
463 #print STDERR Dumper $germplasm_markerprofiles;
466 #Germplasm Attributes
468 #
472 #MarkerProfiles
474 #Markerprofile search
476 $d->get_ok('/brapi/v1/markerprofiles?session_token='.$session_token);
477 $json_response = $d->find_element_ok('body', 'tag_name', "find body")->get_text();
478 my $markerprofiles = $j->jsonToObj($json_response);
479 #print STDERR Dumper $markerprofiles;
481 is_deeply($markerprofiles, {
482 'metadata' => {
483 'status' => [],
484 'pagination' => {
485 'totalCount' => 535,
486 'currentPage' => 1,
487 'totalPages' => 27,
488 'pageSize' => 20
489 }
490 },
491 'result' => {
492 'data' => [
493 {
494 'resultCount' => 500,
495 'markerProfileDbId' => 1622,
496 'germplasmDbId' => 38937,
497 'extractDbId' => '',
498 'analysisMethod' => 'GBS ApeKI genotyping v4'
499 },
500 {
501 'resultCount' => 500,
502 'markerProfileDbId' => 1623,
503 'germplasmDbId' => 38994,
504 'extractDbId' => '',
505 'analysisMethod' => 'GBS ApeKI genotyping v4'
506 },
507 {
508 'resultCount' => 500,
509 'markerProfileDbId' => 1624,
510 'germplasmDbId' => 39006,
511 'extractDbId' => '',
512 'analysisMethod' => 'GBS ApeKI genotyping v4'
513 },
514 {
515 'resultCount' => 500,
516 'markerProfileDbId' => 1625,
517 'germplasmDbId' => 39045,
518 'extractDbId' => '',
519 'analysisMethod' => 'GBS ApeKI genotyping v4'
520 },
521 {
522 'resultCount' => 500,
523 'markerProfileDbId' => 1626,
524 'germplasmDbId' => 38881,
525 'extractDbId' => '',
526 'analysisMethod' => 'GBS ApeKI genotyping v4'
527 },
528 {
529 'resultCount' => 500,
530 'markerProfileDbId' => 1627,
531 'germplasmDbId' => 39007,
532 'extractDbId' => '',
533 'analysisMethod' => 'GBS ApeKI genotyping v4'
534 },
535 {
536 'resultCount' => 500,
537 'markerProfileDbId' => 1628,
538 'germplasmDbId' => 39027,
539 'extractDbId' => '',
540 'analysisMethod' => 'GBS ApeKI genotyping v4'
541 },
542 {
543 'resultCount' => 500,
544 'markerProfileDbId' => 1629,
545 'germplasmDbId' => 39028,
546 'extractDbId' => '',
547 'analysisMethod' => 'GBS ApeKI genotyping v4'
548 },
549 {
550 'resultCount' => 500,
551 'markerProfileDbId' => 1630,
552 'germplasmDbId' => 39033,
553 'extractDbId' => '',
554 'analysisMethod' => 'GBS ApeKI genotyping v4'
555 },
556 {
557 'resultCount' => 500,
558 'markerProfileDbId' => 1631,
559 'germplasmDbId' => 38917,
560 'extractDbId' => '',
561 'analysisMethod' => 'GBS ApeKI genotyping v4'
562 },
563 {
564 'resultCount' => 500,
565 'markerProfileDbId' => 1632,
566 'germplasmDbId' => 39044,
567 'extractDbId' => '',
568 'analysisMethod' => 'GBS ApeKI genotyping v4'
569 },
570 {
571 'resultCount' => 500,
572 'markerProfileDbId' => 1633,
573 'germplasmDbId' => 39050,
574 'extractDbId' => '',
575 'analysisMethod' => 'GBS ApeKI genotyping v4'
576 },
577 {
578 'resultCount' => 500,
579 'markerProfileDbId' => 1634,
580 'germplasmDbId' => 39070,
581 'extractDbId' => '',
582 'analysisMethod' => 'GBS ApeKI genotyping v4'
583 },
584 {
585 'resultCount' => 500,
586 'markerProfileDbId' => 1635,
587 'germplasmDbId' => 38884,
588 'extractDbId' => '',
589 'analysisMethod' => 'GBS ApeKI genotyping v4'
590 },
591 {
592 'resultCount' => 500,
593 'markerProfileDbId' => 1636,
594 'germplasmDbId' => 38981,
595 'extractDbId' => '',
596 'analysisMethod' => 'GBS ApeKI genotyping v4'
597 },
598 {
599 'resultCount' => 500,
600 'markerProfileDbId' => 1637,
601 'germplasmDbId' => 38998,
602 'extractDbId' => '',
603 'analysisMethod' => 'GBS ApeKI genotyping v4'
604 },
605 {
606 'resultCount' => 500,
607 'markerProfileDbId' => 1638,
608 'germplasmDbId' => 39078,
609 'extractDbId' => '',
610 'analysisMethod' => 'GBS ApeKI genotyping v4'
611 },
612 {
613 'resultCount' => 500,
614 'markerProfileDbId' => 1639,
615 'germplasmDbId' => 39052,
616 'extractDbId' => '',
617 'analysisMethod' => 'GBS ApeKI genotyping v4'
618 },
619 {
620 'resultCount' => 500,
621 'markerProfileDbId' => 1640,
622 'germplasmDbId' => 38946,
623 'extractDbId' => '',
624 'analysisMethod' => 'GBS ApeKI genotyping v4'
625 },
626 {
627 'resultCount' => 500,
628 'markerProfileDbId' => 1641,
629 'germplasmDbId' => 39024,
630 'extractDbId' => '',
631 'analysisMethod' => 'GBS ApeKI genotyping v4'
632 }
633 ]
634 }
635 }, 'markerprofiles test');
637 #Markerprofile data
639 $d->get_ok('/brapi/v1/markerprofiles/1622?session_token='.$session_token);
640 $json_response = $d->find_element_ok('body', 'tag_name', "find body")->get_text();
641 my $markerprofiles_detail = $j->jsonToObj($json_response);
642 #print STDERR Dumper $markerprofiles_detail;
644 is_deeply($markerprofiles_detail, {
645 'metadata' => {
646 'status' => [],
647 'pagination' => {
648 'totalCount' => 500,
649 'currentPage' => 1,
650 'totalPages' => 25,
651 'pageSize' => 20
652 }
653 },
654 'result' => {
655 'markerprofileDbId' => '1622',
656 'data' => [
657 {
658 'S5_36739' => 'AA'
659 },
660 {
661 'S13_92567' => 'BB'
662 },
663 {
664 'S69_57277' => 'AB'
665 },
666 {
667 'S80_224901' => 'AA'
668 },
669 {
670 'S80_232173' => 'BB'
671 },
672 {
673 'S80_265728' => 'AA'
674 },
675 {
676 'S97_219243' => 'AB'
677 },
678 {
679 'S224_309814' => 'BB'
680 },
681 {
682 'S248_174244' => 'BB'
683 },
684 {
685 'S318_245078' => 'AA'
686 },
687 {
688 'S325_476494' => 'AB'
689 },
690 {
691 'S341_311907' => 'BB'
692 },
693 {
694 'S341_745165' => 'BB'
695 },
696 {
697 'S341_927602' => 'BB'
698 },
699 {
700 'S435_153155' => 'BB'
701 },
702 {
703 'S620_130205' => 'BB'
704 },
705 {
706 'S784_76866' => 'BB'
707 },
708 {
709 'S821_289681' => 'AA'
710 },
711 {
712 'S823_109683' => 'AA'
713 },
714 {
715 'S823_119622' => 'BB'
716 }
717 ],
718 'germplasmDbId' => 38937,
719 'extractDbId' => '',
720 'analysisMethod' => 'GBS ApeKI genotyping v4',
721 'encoding' => 'AA,BB,AB'
722 }
723 }, 'markerprofiles detail test');
727 $d->get_ok('/brapi/v1/maps?session_token='.$session_token);
728 $json_response = $d->find_element_ok('body', 'tag_name', "find body")->get_text();
729 my $maps = $j->jsonToObj($json_response);
730 #print STDERR Dumper $maps;
732 is_deeply($maps, {
733 'metadata' => {
734 'status' => [],
735 'pagination' => {
736 'totalCount' => 1,
737 'currentPage' => 1,
738 'totalPages' => 1,
739 'pageSize' => 20
740 }
741 },
742 'result' => {
743 'data' => [
744 {
745 'name' => 'GBS ApeKI genotyping v4',
746 'publishedDate' => undef,
747 'species' => 'Cassava SNP genotypes for stock 520 20 24 25 29 30 44 46 108 109 112 114 520name = UG120066, id = 38937)',
748 'mapId' => 1,
749 'comments' => '',
750 'markerCount' => 500,
751 'unit' => 'bp',
752 'linkageGroupCount' => 268,
753 'type' => 'physical'
754 }
755 ]
756 }
757 }, 'maps data test');
759 $d->get_ok('/brapi/v1/maps/1?session_token='.$session_token);
760 $json_response = $d->find_element_ok('body', 'tag_name', "find body")->get_text();
761 my $maps_detail = $j->jsonToObj($json_response);
762 #print STDERR Dumper $maps_detail;
764 is_deeply($maps_detail, {
765 'metadata' => {
766 'status' => [],
767 'pagination' => {
768 'totalCount' => 268,
769 'currentPage' => 1,
770 'totalPages' => 14,
771 'pageSize' => 20
772 }
773 },
774 'result' => {
775 'unit' => 'bp',
776 'name' => 'GBS ApeKI genotyping v4',
777 'linkageGroups' => [
778 {
779 'numberMarkers' => 1,
780 'maxPosition' => '185859',
781 'linkageGroupId' => 'S10114'
782 },
783 {
784 'numberMarkers' => 2,
785 'maxPosition' => '899514',
786 'linkageGroupId' => 'S10173'
787 },
788 {
789 'numberMarkers' => 1,
790 'maxPosition' => '146006',
791 'linkageGroupId' => 'S10241'
792 },
793 {
794 'numberMarkers' => 1,
795 'maxPosition' => '465354',
796 'linkageGroupId' => 'S1027'
797 },
798 {
799 'numberMarkers' => 1,
800 'maxPosition' => '21679',
801 'linkageGroupId' => 'S10367'
802 },
803 {
804 'numberMarkers' => 1,
805 'maxPosition' => '216535',
806 'linkageGroupId' => 'S1046'
807 },
808 {
809 'numberMarkers' => 3,
810 'maxPosition' => '529025',
811 'linkageGroupId' => 'S10493'
812 },
813 {
814 'numberMarkers' => 3,
815 'maxPosition' => '96591',
816 'linkageGroupId' => 'S10551'
817 },
818 {
819 'numberMarkers' => 5,
820 'maxPosition' => '996687',
821 'linkageGroupId' => 'S10563'
822 },
823 {
824 'numberMarkers' => 2,
825 'maxPosition' => '585587',
826 'linkageGroupId' => 'S10689'
827 },
828 {
829 'numberMarkers' => 1,
830 'maxPosition' => '25444',
831 'linkageGroupId' => 'S10780'
832 },
833 {
834 'numberMarkers' => 2,
835 'maxPosition' => '244349',
836 'linkageGroupId' => 'S10797'
837 },
838 {
839 'numberMarkers' => 1,
840 'maxPosition' => '781226',
841 'linkageGroupId' => 'S10963'
842 },
843 {
844 'numberMarkers' => 1,
845 'maxPosition' => '78443',
846 'linkageGroupId' => 'S11106'
847 },
848 {
849 'numberMarkers' => 2,
850 'maxPosition' => '231468',
851 'linkageGroupId' => 'S11179'
852 },
853 {
854 'numberMarkers' => 1,
855 'maxPosition' => '108022',
856 'linkageGroupId' => 'S11267'
857 },
858 {
859 'numberMarkers' => 1,
860 'maxPosition' => '16826',
861 'linkageGroupId' => 'S1127'
862 },
863 {
864 'numberMarkers' => 1,
865 'maxPosition' => '135336',
866 'linkageGroupId' => 'S11279'
867 },
868 {
869 'numberMarkers' => 4,
870 'maxPosition' => '591849',
871 'linkageGroupId' => 'S11297'
872 },
873 {
874 'numberMarkers' => 2,
875 'maxPosition' => '582872',
876 'linkageGroupId' => 'S11341'
877 }
878 ],
879 'type' => 'physical',
880 'mapId' => 1
881 }
882 }, 'map details test');
884 $d->get_ok('/brapi/v1/maps/1/positions?session_token='.$session_token);
885 $json_response = $d->find_element_ok('body', 'tag_name', "find body")->get_text();
886 my $maps_position = $j->jsonToObj($json_response);
887 #print STDERR Dumper $maps_position;
889 is_deeply($maps_position, {
890 'metadata' => {
891 'status' => [],
892 'pagination' => {
893 'totalCount' => 500,
894 'currentPage' => 1,
895 'totalPages' => 25,
896 'pageSize' => 20
897 }
898 },
899 'result' => {
900 'data' => [
901 {
902 'markerName' => 'S5_36739',
903 'linkageGroup' => 'S5',
904 'markerId' => 'S5_36739',
905 'location' => '36739'
906 },
907 {
908 'markerName' => 'S13_92567',
909 'linkageGroup' => 'S13',
910 'markerId' => 'S13_92567',
911 'location' => '92567'
912 },
913 {
914 'markerName' => 'S69_57277',
915 'linkageGroup' => 'S69',
916 'markerId' => 'S69_57277',
917 'location' => '57277'
918 },
919 {
920 'markerName' => 'S80_224901',
921 'linkageGroup' => 'S80',
922 'markerId' => 'S80_224901',
923 'location' => '224901'
924 },
925 {
926 'markerName' => 'S80_232173',
927 'linkageGroup' => 'S80',
928 'markerId' => 'S80_232173',
929 'location' => '232173'
930 },
931 {
932 'markerName' => 'S80_265728',
933 'linkageGroup' => 'S80',
934 'markerId' => 'S80_265728',
935 'location' => '265728'
936 },
937 {
938 'markerName' => 'S97_219243',
939 'linkageGroup' => 'S97',
940 'markerId' => 'S97_219243',
941 'location' => '219243'
942 },
943 {
944 'markerName' => 'S224_309814',
945 'linkageGroup' => 'S224',
946 'markerId' => 'S224_309814',
947 'location' => '309814'
948 },
949 {
950 'markerName' => 'S248_174244',
951 'linkageGroup' => 'S248',
952 'markerId' => 'S248_174244',
953 'location' => '174244'
954 },
955 {
956 'markerName' => 'S318_245078',
957 'linkageGroup' => 'S318',
958 'markerId' => 'S318_245078',
959 'location' => '245078'
960 },
961 {
962 'markerName' => 'S325_476494',
963 'linkageGroup' => 'S325',
964 'markerId' => 'S325_476494',
965 'location' => '476494'
966 },
967 {
968 'markerName' => 'S341_311907',
969 'linkageGroup' => 'S341',
970 'markerId' => 'S341_311907',
971 'location' => '311907'
972 },
973 {
974 'markerName' => 'S341_745165',
975 'linkageGroup' => 'S341',
976 'markerId' => 'S341_745165',
977 'location' => '745165'
978 },
979 {
980 'markerName' => 'S341_927602',
981 'linkageGroup' => 'S341',
982 'markerId' => 'S341_927602',
983 'location' => '927602'
984 },
985 {
986 'markerName' => 'S435_153155',
987 'linkageGroup' => 'S435',
988 'markerId' => 'S435_153155',
989 'location' => '153155'
990 },
991 {
992 'markerName' => 'S620_130205',
993 'linkageGroup' => 'S620',
994 'markerId' => 'S620_130205',
995 'location' => '130205'
996 },
997 {
998 'markerName' => 'S784_76866',
999 'linkageGroup' => 'S784',
1000 'markerId' => 'S784_76866',
1001 'location' => '76866'
1002 },
1003 {
1004 'markerName' => 'S821_289681',
1005 'linkageGroup' => 'S821',
1006 'markerId' => 'S821_289681',
1007 'location' => '289681'
1008 },
1009 {
1010 'markerName' => 'S823_109683',
1011 'linkageGroup' => 'S823',
1012 'markerId' => 'S823_109683',
1013 'location' => '109683'
1014 },
1015 {
1016 'markerName' => 'S823_119622',
1017 'linkageGroup' => 'S823',
1018 'markerId' => 'S823_119622',
1019 'location' => '119622'
1020 }
1021 ]
1022 }
1023 }, 'maps positions test');
1026 done_testing();