mason/breeders_toolbox/trial.mas

   1
   2 <%doc>
   3
   4 =head1 NAME
   5
   6 /breeders_toolbox/trial.mas - a mason component to display a trial detail page
   7
   8 =head1 AUTHOR
   9
  10 Jeremy D. Edwards
  11
  12 =cut
  13
  14 </%doc>
  15
  16 <%args>
  17 $trial_id
  18 $trial_name
  19 $breeding_program_id
  20 $breeding_program_name
  21 $location_id
  22 $location_name
  23 $year => undef
  24 $trial_type => undef
  25 $planting_date => undef
  26 $harvest_date => undef
  27 $trial_description => undef
  28 $user_can_modify => undef
  29 $has_plant_entries => undef
  30 $has_subplot_entries => undef
  31 $hidap_enabled => undef
  32 $folder_name => undef
  33 $folder_id => undef
  34 $plants_per_plot => undef
  35 $has_expression_atlas => undef
  36 $expression_atlas_url => undef
  37 $site_project_name => undef
  38 $trial_phenotype_files => undef
  39 $sgn_session_id => undef
  40 $user_name => undef
  41 $design_name => undef
  42 $phenotypes_fully_uploaded => undef
  43 $identifier_prefix => 'SGN'
  44 </%args>
  45
  46 <style>
  47
  48 @media (min-width: 1200px) {
  49     .affix {
  50         top:100px;
  51         right:0;
  52         position:fixed;
  53     }
  54 }
  55
  56 </style>
  57
  58 <& /util/import_javascript.mas, classes => [ 'jquery.iframe-post-form', 'CXGN.Trial' , 'jstree/dist/jstree', 'CXGN.BreedersToolbox.HTMLSelect', 'moment_min', 'daterangepicker' ] &>
  59
  60 <%perl>
  61   use Data::Dumper;
  62 my $start_time = time();
  63
  64 #print STDERR "Check 7 (mason) : ".(time() - $start_time)."\n";
  65
  66 </%perl>
  67
  68 <br/>
  69
  70
  71 <& /page/page_title.mas, title=>"Trial detail for ".$trial_name &>
  72
  73 <&| /page/info_section.mas, title=>"Trial details",  collapsible => 1, subtitle => '[<a id="edit_trial_details">Edit Trial Details</a>]'&>
  74
  75
  76 <div class="panel panel-default">
  77 <table class="table table-hover" >
  78
  79 <tr>
  80 <td><b>Trial Name</b></td>
  81 <td>
  82 <div id="trial_name">
  83 % if ($trial_name) {
  84 %   print "$trial_name";
  85 % } else {
  86 %   print "[No Trial Name]";
  87 % }
  88 </div>
  89 </td>
  90 </tr>
  91
  92 <tr>
  93 <td><b>Breeding Program </b></td>
  94 <td>
  95 <span id="breeding_program">
  96 % if ($breeding_program_name) {
  97 %  print "$breeding_program_name";
  98 % }
  99 % else {
 100 %  print "No Breeding Program";
 101 % }
 102 </span>
 103 </td>
 104 </tr>
 105
 106 <tr>
 107 <td><b>Trial Location</b></td>
 108 <td>
 109 <div id="trial_location">
 110 % if ($location_name) {
 111 %  print "$location_name";
 112 % } else {
 113 %  print "[No Location]";
 114 % }
 115 </div>
 116 </td>
 117 </tr>
 118
 119 <tr>
 120 <td><b>Year</b></td>
 121 <td>
 122 <div id="trial_year">
 123 % if ($year) {
 124 %  print "$year";
 125 % } else {
 126 %  print "[No Year]";
 127 % }
 128 </div>
 129 </td>
 130 </tr>
 131
 132 <tr>
 133 <td><b>Trial Type</b></td>
 134 <td>
 135 <div id="trial_type">
 136 % if ($trial_type) {
 137 %  print "$trial_type";
 138 % } else {
 139 % print "[Type not set]";
 140 % }
 141 </div>
 142 </td>
 143 </tr>
 144
 145 <tr>
 146 <td><b>Planting Date</b></td>
 147 <td>
 148 <div id="planting_date">
 149 % if ($planting_date) {
 150   <a href="/breeders/trial/<% $trial_id %>?currentDate=<% $planting_date %>" ><% $planting_date %></a>
 151 % } else {
 152 %  print "[No Planting Date]";
 153 % }
 154 </div>
 155 </td>
 156 </tr>
 157
 158 <tr>
 159 <td><b>Harvest Date</b></td>
 160 <td>
 161 <div id="harvest_date">
 162 % if ($harvest_date) {
 163   <a href="/breeders/trial/<% $trial_id %>?currentDate=<% $harvest_date %>" ><% $harvest_date %></a>
 164 % } else {
 165 %  print "[No Harvest Date]";
 166 % }
 167 </div>
 168 </td>
 169 </tr>
 170
 171 <tr><td><b>Description</b></td>
 172 <td>
 173 <div id="trial_description">
 174 % if ($trial_description) {
 175 %  print "$trial_description";
 176 % } else {
 177 %  print "[No Description]";
 178 % }
 179 </div>
 180 </td>
 181 </tr>
 182 </table>
 183 </div>
 184
 185 % my $folder_collapsed = 1;
 186 % if ($folder_id) {
 187 % $folder_collapsed = 0;
 188 % }
 189
 190 <div class="well well-sm">
 191
 192 <&| /page/info_section.mas, title=>"Folder", collaspible=>1, collapsed=>$folder_collapsed,
 193   subtitle => '[<a id="new_folder_dialog_link">New Folder</a>] | [<a id="open_folder_dialog_link">Change</a>]' &>
 194
 195   <& /breeders_toolbox/folder/folder_set.mas, breeding_program_id => $breeding_program_id, breeding_program_name =>$breeding_program_name, trial_id => $trial_id, trial_name =>$trial_name &>
 196   <& /breeders_toolbox/folder/folder_new.mas, breeding_program_id => $breeding_program_id, breeding_program_name =>$breeding_program_name &>
 197
 198   <span id="trial_folder_div"><a href="/folder/<% $folder_id %>"><% $folder_name %></a></span>
 199
 200 </&>
 201
 202 </div><!--closes well-->
 203
 204 </&>
 205
 206 <&| /page/info_section.mas, title=>"Trial barcode",  collapsible => 1, subtitle => '[<a id="generate_trial_barcode_link">Generate Barcode</a>]|[<a id="direct_phenotyping_link">Direct Phenotyping</a>]'&>
 207     <div class="well">
 208      <center><& /util/barcode.mas, identifier => "$identifier_prefix"."$trial_id", trial_id=> "$trial_id", trial_name=> "$trial_name", format=>"trial_qrcode"  &></center><br />
 209      </div>
 210      <& /breeders_toolbox/trial/generate_trial_barcode.mas, identifier => "$identifier_prefix"."$trial_id", trial_id=> "$trial_id", trial_name=> "$trial_name" &>
 211
 212 </&>
 213
 214 <& /breeders_toolbox/trial/edit_trial_details_dialog.mas, trial_name => $trial_name, breeding_program => $breeding_program_id, location => $location_id, year => $year, trial_type => $trial_type, planting_date => $planting_date, harvest_date => $harvest_date, trial_description => $trial_description &>
 215
 216 % if ($hidap_enabled) {
 217
 218  <& /hidap/hidap_trial_link.mas, trial_id => $trial_id &>
 219
 220 % }
 221
 222 <& /breeders_toolbox/trial/edit_fieldMap.mas, trial_id => $trial_id, trial_name => $trial_name &>
 223 <&| /page/info_section.mas, id => "physical_layout", title=>"Physical Trial Layout", collapsible=>1, collapsed => 1, subtitle=>'[<a id="upload_trial_coords_link">Upload trial coordinates</a>] [<a id="edit_field_map_link">Edit Field Map</a>] [<button type="button" class="btn btn-link" data-toggle="modal" data-target="#fieldmap_usage_modal">Usage Help <span class="glyphicon glyphicon-question-sign"></span></button>]' &>
 224
 225
 226   <& /breeders_toolbox/trial/trial_coords.mas, trial_id => $trial_id &>
 227
 228
 229 </&>
 230
 231 <& /breeders_toolbox/trial/trial_coords_spreadsheet_upload_format_info.mas &>
 232
 233 <div id="upload_trial_coord_error_display" class="ui-widget">
 234   <table>
 235     <tbody></tbody>
 236   </table>
 237 </div>
 238
 239 <div id="trial_coord_upload_success_dialog_message" class="ui-widget">
 240   The trial coord upload finished.
 241 </div>
 242
 243 <div id="upload_trial_coord_dialog" title="Upload trial coordinates">
 244
 245   <&| /page/explanation.mas, title=>'Template information' &>
 246     <p>
 247       <b>File format information</b>
 248       <br>
 249       <a id="trial_coordinates_upload_spreadsheet_format_info">Spreadsheet format</a>
 250     </p>
 251   </&>
 252
 253   <form method="post" enctype="multipart/form-data" encoding="multipart/form-data" id="upload_trial_coordinates_form" name="upload_trial_coordinates_form">
 254
 255     <label for="trial_coordinates_uploaded_file" style="display: inline-block; width: 100px;">Upload trial coordinates file:</label>
 256     <input type="file" name="trial_coordinates_uploaded_file" id="trial_coordinates_uploaded_file" encoding="multipart/form-data" />
 257
 258     </form>
 259
 260 </div>
 261
 262 <!--<style>
 263   div.left {
 264     float: left;
 265     clear: both;
 266   }
 267 .ui-autocomplete {
 268   max-height: 100px;
 269   overflow-y: auto;
 270   /* prevent horizontal scrollbar */
 271   overflow-x: hidden;
 272 }
 273
 274 </style> -->
 275
 276
 277 <& /breeders_toolbox/trial/download_layout_dialog.mas, trial_id => $trial_id, trial_name => $trial_name, has_subplot_entries => $has_subplot_entries &>
 278
 279 <&| /page/info_section.mas, id => "trial_design_section", title=>"Design", collapsible=>1, collapsed=>0, subtitle=>"[<a id='trial_download_layout_button'>Download Layout</a>]"  &>
 280
 281 <div class="well well-sm">
 282
 283 <& /breeders_toolbox/trial/design.mas, trial_id => $trial_id &>
 284
 285 <&| /page/info_section.mas, id => "trial_accessions", title=>"Accessions", is_subsection => 1, collapsible=>1, collapsed=>1 &>
 286
 287 <& /breeders_toolbox/trial/trial_accessions.mas, trial_id => $trial_id &>
 288
 289 </&>
 290
 291 <&| /page/info_section.mas, id => "trial_controls", title=>"Controls",  is_subsection => 1, collapsible=>1, collapsed=>1 &>
 292
 293 <& /breeders_toolbox/trial/trial_controls.mas, trial_id => $trial_id &>
 294
 295 </&>
 296
 297 <&| /page/info_section.mas, id => "trial_plots", title=>"Plots",  is_subsection => 1, collapsible=>1, collapsed=>1 &>
 298
 299 <& /breeders_toolbox/trial/trial_plots.mas, trial_id => $trial_id &>
 300
 301 </&>
 302
 303 % if ($has_subplot_entries) {
 304
 305 <&| /page/info_section.mas, id => "trial_subplots", title=>"Subplots",  is_subsection => 1, collapsible=>1, collapsed=>1 &>
 306
 307 <& /breeders_toolbox/trial/trial_subplots.mas, trial_id => $trial_id &>
 308
 309 </&>
 310
 311 % }
 312
 313 <&| /page/info_section.mas, id => "trial_plants", title=>"Plant Entries", is_subsection => 1, collapsible=> 1, collapsed=>1 &>
 314
 315 <div id="plant_entries_section">
 316
 317 % if (!$has_plant_entries) {
 318    <button class="btn btn-default" id="create_plant_entries_button">Add plant entries</button>
 319    <& /breeders_toolbox/trial/add_plants_per_plot.mas, trial_id => $trial_id, trial_name => $trial_name &>
 320
 321 % } else {
 322
 323 <& /breeders_toolbox/trial/trial_plants.mas, trial_id => $trial_id &>
 324
 325 % }
 326
 327 </div><!--closes plant_entries_section -->
 328
 329 </&>
 330
 331 <& /breeders_toolbox/trial/add_trial_treatment_dialogs.mas &>
 332 <&| /page/info_section.mas, id => "trial_treatments", title=>"Treatments",  is_subsection => 1, collapsible=>1, collapsed=>1, subtitle=>"[<a id='trial_detail_page_add_treatment'>Add Treatment</a>]" &>
 333
 334 <& /breeders_toolbox/trial/trial_treatments.mas, trial_id => $trial_id &>
 335
 336 </&>
 337
 338 </div><!-- closes well -->
 339
 340 </&>
 341
 342 <& /breeders_toolbox/trial/download_phenotypes_dialog.mas, trial_ids => $trial_id, dialog_name => $trial_name, dialog_type => 'Trial' &>
 343
 344 <&| /page/info_section.mas,
 345    title       => 'Weather at Trial Location',
 346    collapsible => 1,
 347 &>
 348
 349         <& /breeders_toolbox/trial/weather.mas, location => $location_name &>
 350
 351 </&>
 352
 353 <&| /page/info_section.mas, id=> "trial_detail_traits_assayed", title => "Traits assayed", collapsible=>1, collapsed=>1, hide_if_empty=>1, subtitle=>"[<a id='trial_download_phenotypes_button'>Download Trial Data</a>]" &>
 354
 355 % if ($has_expression_atlas) {
 356     <& /breeders_toolbox/trial/export_trial_to_expression_atlas.mas, trial_id => $trial_id, trial_name=>$trial_name, expression_atlas_url=>$expression_atlas_url, site_project_name=>$site_project_name, sgn_session_id=>$sgn_session_id, user_name=>$user_name &>
 357 % }
 358
 359 <& /breeders_toolbox/trial/phenotype_summary.mas, trial_id => $trial_id &>
 360
 361 </&>
 362
 363 <&| /page/info_section.mas, id=> "compute_derived_traits", title=>'Compute Trait Phenotypes', collapsible=>1, collapsed=>1, &>
 364
 365         <& /breeders_toolbox/trial/derived_trait.mas, trial_id => $trial_id &>
 366
 367 </&>
 368
 369
 370
 371 <&| /page/info_section.mas,
 372    title       => 'Trial JBrowse',
 373    collapsible => 1,
 374 &>
 375
 376         <& /breeders_toolbox/trial/jbrowse_instance.mas, trial_id => $trial_id &>
 377
 378 </&>
 379
 380 <&| /page/info_section.mas, title=>"Files", collapsible=>1, collapsed=>0 &>
 381
 382 <div class="well well-sm">
 383
 384   <&| /page/info_section.mas, title=>"Data Collection Files", is_subsection => 1, collapsible=>1, collapsed=>0, &>
 385     <&| /page/info_section.mas, title=>"Phenotyping Spreadsheets", empty_message=>'', is_subsection => 1, collapsible=>0, collapsed=>0, subtitle=>'[<a name="create_spreadsheet_link">Create Spreadsheet</a>]' &>
 386     </&>
 387     <&| /page/info_section.mas, title=>"Android Field Book Layout", empty_message=>'', is_subsection => 1, collapsible=>0, collapsed=>0, subtitle=>'[<a name="create_fieldbook_link">Create Field Book</a>]' &>
 388     </&>
 389     <&| /page/info_section.mas, title=>"Data Collector Spreadsheet", empty_message=>'', is_subsection => 1, collapsible=>0, collapsed=>0, subtitle=> '[<a id="create_DataCollector_link">Create DataCollector Spreadsheet</a>]' &>
 390     </&>
 391   </&><!-- closes create new phenotyping file section -->
 392   <&| /page/info_section.mas, title=>"Upload Phenotyping Files", is_subsection => 1, collapsible=>1, collapsed=>0, &>
 393     <&| /page/info_section.mas, title=>"Phenotyping Spreadsheets", empty_message=>'', is_subsection => 1, collapsible=>0, collapsed=>0, subtitle=>'[<a id="upload_spreadsheet_phenotypes_link">Upload</a>]'&>
 394     </&>
 395     <&| /page/info_section.mas, title=>"Android Field Book Exported", empty_message=>'', is_subsection => 1, collapsible=>0, collapsed=>0, subtitle=>'[<a id="upload_fieldbook_phenotypes_link">Upload</a>]'&>
 396     </&>
 397     <&| /page/info_section.mas, title=>"Data Collector Spreadsheet", empty_message=>'', is_subsection => 1, collapsible=>0, collapsed=>0, subtitle=>'[<a id="upload_datacollector_phenotypes_link">Upload</a>]'&>
 398     </&>
 399   </&><!-- closes upload new phenotype file section -->
 400   <&| /page/info_section.mas, title=>"Uploaded Phenotyping Files", is_subsection => 1, collapsible=>1, collapsed=>0, subtitle=>'[<a id="trial_set_phenotypes_fully_link">Phenotypes Fully Uploaded?</a>]' &>
 401
 402   <table class="table table-bordered files_datatables" alt="">
 403   <thead>
 404     <tr><th>Filename</th><th>Date Uploaded</th><th>Uploaded By</th><th>File Type</th><th>Options</th></tr>
 405   </thead>
 406   <tbody>
 407 % foreach my $f (@$trial_phenotype_files) {
 408     <tr>
 409       <td><% $f->[4] %></td>
 410       <td><% $f->[1] %></td>
 411       <td><a href="/solpeople/profile/<% $f->[2] %>"><% $f->[3] %></a></td>
 412       <td><% $f->[6] %></td>
 413       <td><a href="/breeders/phenotyping/view/<% $f->[0] %>">View</a> | <a href="/breeders/phenotyping/download/<% $f->[0] %>">Download</a></td>
 414     </tr>
 415 % }
 416   </tbody>
 417   </table>
 418
 419   </&><!-- closes uploaded file section -->
 420
 421 </div><!-- closes well -->
 422
 423 </&><!-- closes entire phenotyping file section -->
 424
 425 <& /breeders_toolbox/upload_phenotype_spreadsheet.mas &>
 426 <& /fieldbook/upload_phenotype_fieldbook.mas &>
 427 <& /breeders_toolbox/upload_phenotype_datacollector.mas &>
 428
 429 <& /breeders_toolbox/trial/create_datacollector_dialog.mas, trial_id => $trial_id, trial_name => $trial_name &>
 430 <& /fieldbook/create_fieldbook_dialog.mas, trial_id => $trial_id, trial_name => $trial_name &>
 431 <& /breeders_toolbox/trial/create_spreadsheet_dialog.mas, trial_id => $trial_id, trial_name => $trial_name &>
 432
 433 <& /breeders_toolbox/trial/set_phenotypes_fully_uploaded.mas, trial_id => $trial_id &>
 434
 435 % my $data_agreement_link = "Add/edit data agreement";
 436 % if ($user_can_modify) { $data_agreement_link = '[<a id="add_data_agreement">Add/edit data agreement</a>]'; }
 437 <&| /page/info_section.mas, title=>"Data Agreement", is_subsection => 0, collapsible=>1, collapsed=>0,  subtitle=> $data_agreement_link  &>
 438
 439 <& /breeders_toolbox/data_agreement.mas, trial_id => $trial_id &>
 440
 441 </&>
 442
 443 <&| /page/info_section.mas, title=>'Delete trial data', subtitle=>'<font color="red" role="">Deletion cannot be undone</font>', collapsed=>1, collapsible=>1 &>
 444   <& /breeders_toolbox/trial/trial_deletion.mas, trial_id => $trial_id  &>
 445
 446 </&>
 447
 448 % #print STDERR "Check 9 (mason) : ".(time() - $start_time)."\n";
 449
 450 <!-- Phenotypic correlation analysis -->
 451 <& /solgs/population/correlation.mas,
 452    trial_id => $trial_id
 453 &>
 454
 455   <!-- Population structure analysis -- PCA -->
 456 <& /solgs/model/pca.mas,
 457    trial_id => $trial_id
 458  &>
 459
 460 % #print STDERR "Check 10 (mason) : ".(time() - $start_time)."\n";
 461
 462 <div id="trialIDDiv" class="trialIDDivClass" style="display:none;">
 463 % print $trial_id;
 464 </div>
 465
 466 <div data-spy="affix" data-offset-top="0" style="max-height: 100%; overflow-y: auto;">
 467     <div class="panel panel-info">
 468         <div class="panel-heading">Completion</div>
 469         <div class="panel-body">
 470
 471 <&| /page/info_section.mas, title=>"Trial Info", collapsible=>1, collapsed=>0 &>
 472 %  if ($trial_name) {
 473             <p class="text-success" title="This trial has a name saved. You can view and edit this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Trial Name&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>
 474 %  } else {
 475             <p class="text-danger" title="This trial does not have a name. Please add this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Trial Name&nbsp;&nbsp;</small><span class="glyphicon glyphicon-remove-sign"></span></p>
 476 %  }
 477 %  if ($breeding_program_name) {
 478             <p class="text-success" title="This trial has a breeding program saved. You can view and edit this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Breeding Program&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>
 479 %  } else {
 480             <p class="text-danger" title="This trial does not have a breeding program. Please add this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Breeding Program&nbsp;&nbsp;</small><span class="glyphicon glyphicon-remove-sign"></span></p>
 481 %  }
 482 %  if ($location_name) {
 483             <p class="text-success" title="This trial has a location saved. You can view and edit this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Location&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>
 484 %  } else {
 485             <p class="text-danger" title="This trial does not have a location. Please add this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Location&nbsp;&nbsp;</small><span class="glyphicon glyphicon-remove-sign"></span></p>
 486 %  }
 487 %  if ($year) {
 488             <p class="text-success" title="This trial has a year saved. You can view and edit this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Year&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>
 489 %  } else {
 490             <p class="text-danger" title="This trial does not have a year. Please add this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Year&nbsp;&nbsp;</small><span class="glyphicon glyphicon-remove-sign"></span></p>
 491 %  }
 492 %  if ($trial_type) {
 493             <p class="text-success" title="This trial has a trial type saved. You can view and edit this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Trial Type&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>
 494 %  } else {
 495             <p class="text-danger" title="This trial does not have a trial type. Please add this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Trial Type&nbsp;&nbsp;</small><span class="glyphicon glyphicon-remove-sign"></span></p>
 496 %  }
 497 %  if ($planting_date) {
 498             <p class="text-success" title="This trial has a planting date saved. You can view and edit this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Planting Date&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>
 499 %  } else {
 500             <p class="text-danger" title="This trial does not have a planting date. Please add this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Planting Date&nbsp;&nbsp;</small><span class="glyphicon glyphicon-remove-sign"></span></p>
 501 %  }
 502 %  if ($harvest_date) {
 503             <p class="text-success" title="This trial has a harvest date saved. You can view and edit this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Harvest Date&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>
 504 %  } else {
 505             <p class="text-danger" title="This trial does not have a harvest date. Please add this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Harvest Date&nbsp;&nbsp;</small><span class="glyphicon glyphicon-remove-sign"></span></p>
 506 %  }
 507 %  if ($trial_description) {
 508             <p class="text-success" title="This trial has a description saved. You can view and edit this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Description&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>
 509 %  } else {
 510             <p class="text-danger" title="This trial does not have a description. Please add this information by clicking [Edit Trial Details] in the Trial Detail section on this page."><small>Description&nbsp;&nbsp;</small><span class="glyphicon glyphicon-remove-sign"></span></p>
 511 %  }
 512 %  if ($folder_id) {
 513             <p class="text-success" title="This trial is saved in a folder or breeding program. You can change this by clicking [Change] in the Folder section on this page."><small>In Folder&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>
 514 %  } else {
 515             <p class="text-info" title="This trial is not in a folder! If this happens please contact us because this should not happen. A trial should always be in a folder or breeding program."><small>Not In Folder&nbsp;&nbsp;</small><span class="glyphicon glyphicon-info-sign"></span></p>
 516 %  }
 517 </&>
 518
 519 <&| /page/info_section.mas, id=>"trial_completion_layout_section", title=>"Field Design", collapsible=>1, collapsed=>1 &>
 520 %  if ($design_name) {
 521             <p class="text-success" title="This trial has a design type saved. You can view and download this information in the Design section on this page."><small>Has Field Design&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>
 522 %  } else {
 523             <p class="text-danger" title="This trial does not have a design type saved! If this happens please contact us because this should not happen!"><small>No Field Design&nbsp;&nbsp;</small><span class="glyphicon glyphicon-remove-sign"></span></p>
 524 %  }
 525
 526             <div id="trial_completion_layout_section_div">
 527                 <div class="well well-sm">LOADING...</div>
 528             </div>
 529
 530 %  if ($has_plant_entries) {
 531             <p class="text-success" title="This trial has plot and plant entries saved. This means that phenotypes can be recorded on the plot and plant level."><small>Has Plots<br/>And Plants&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>
 532 %  } else {
 533             <p class="text-info" title="This trial has plot entries saved, but no plant entries. Plant entries are needed for plant level phenotyping. You can create plant entries in Design->Plant Entries section on this page."><small>Has Plots<br/>No Plants&nbsp;&nbsp;</small><span class="glyphicon glyphicon-info-sign"></span></p>
 534 %  }
 535 </&>
 536
 537 <&| /page/info_section.mas, id=>"trial_completion_phenotype_section", title=>"Phenotyping", collapsible=>1, collapsed=>1 &>
 538
 539             <div id="trial_completion_phenotype_section_div">
 540                 <div class="well well-sm">LOADING...</div>
 541             </div>
 542
 543 %  if ($phenotypes_fully_uploaded) {
 544             <p class="text-success" title="All recorded phenotypes for this trial are saved in the database. You can change this by clicking [Phenotypes Fully Uploaded?] in the Files section on this page."><small>Phenotyping<br/>Complete&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>
 545 %  } else {
 546             <p class="text-info" title="Once phenotypes are fully uploaded for a trial, you can click [Phenotypes Fully Uploaded?] in the Files section on this page."><small>Phenotyping<br/>Incomplete&nbsp;&nbsp;</small><span class="glyphicon glyphicon-info-sign"></span></p>
 547 %  }
 548 </&>
 549
 550         </div>
 551     </div>
 552 </div>
 553
 554 <script defer="defer">
 555
 556 jQuery(document).ready(function () {
 557
 558   trial_detail_page_setup_dialogs();
 559
 560   jQuery('#delete_breeding_program_trial_association_link').click(
 561      function() {
 562         var trial_id = get_trial_id();
 563
 564         var yes = confirm("Do you really want to remove this trial from the breeding program?");
 565         if (yes) {
 566             jQuery.ajax( {
 567                 url: '/breeders/program/remove/<% $breeding_program_id %>/'+trial_id,
 568                 data: { },
 569                 async: false,
 570                 success: function(response) {
 571                 }
 572             });
 573         }
 574     });
 575
 576     jQuery('#trial_completion_layout_section_onswitch').click( function() {
 577         jQuery.ajax ( {
 578             url : '/ajax/breeders/trial/'+ <% $trial_id %> + '/trial_completion_layout_section',
 579             success: function(response){
 580                 var html = '';
 581                 if (response.has_layout == 1){
 582                     html += '<p class="text-success" title="This trial has plots and their layout information saved in the database. You can view and download this information in the Design section on this page."><small>Has Field Layout&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>';
 583                 } else {
 584                     html += '<p class="text-danger" title="This trial does not have any plot layout info saved in the trial! If this occurs please contact us because this should not occur!"><small>No Field Layout&nbsp;&nbsp;</small><span class="glyphicon glyphicon-remove-sign"></span></p>';
 585                 }
 586                 if (response.has_physical_map == 1){
 587                     html += '<p class="text-success" title="This trial has a physical map saved. You can view and edit the physical map in the Physical Trial Layout section on this page."><small>Has Physial Map&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>';
 588                 } else {
 589                     html += '<p class="text-info" title="This trial does not have physical map information. This means the map will not appear in the Physical Trial Layout section. You can add physical map info by clicking [Upload Trial Coordinates] in the Physical Trial Layout section on this page."><small>No Physical Map&nbsp;&nbsp;</small><span class="glyphicon glyphicon-info-sign"></span></p>';
 590                 }
 591                 jQuery('#trial_completion_layout_section_div').html(html);
 592             },
 593             error: function(response){
 594                 alert('Error retrieving trial completion layout section');
 595             }
 596
 597         });
 598     });
 599
 600     jQuery('#trial_completion_phenotype_section_onswitch').click( function() {
 601         jQuery.ajax ( {
 602             url : '/ajax/breeders/trial/'+ <% $trial_id %> + '/trial_completion_phenotype_section',
 603             success: function(response){
 604                 var html = '';
 605                 if (response.has_phenotypes == 1){
 606                     html = '<p class="text-success" title="This trial has phenotypes saved. You can view and download this data in the Traits Assayed section on this page."><small>Has Phenotypes&nbsp;&nbsp;</small><span class="glyphicon glyphicon-ok-sign"></span></p>';
 607                 } else {
 608                     html = '<p class="text-info" title="This trial does not have any phenotypes stored. You can upload phenotypes in the Files section on this page."><small>No Phenotypes&nbsp;&nbsp;</small><span class="glyphicon glyphicon-info-sign"></span></p>';
 609                 }
 610                 jQuery('#trial_completion_phenotype_section_div').html(html);
 611             },
 612             error: function(response){
 613                 alert('Error retrieving trial completion phenotype section');
 614             }
 615
 616         });
 617     });
 618
 619     jQuery('#direct_phenotyping_link').click(function () {
 620         var  id = <% $trial_id %>;
 621         location.href = '/breeders/trial_phenotyping?trial_id=' + id + '';
 622     });
 623
 624 });
 625
 626 </script>