lib/CXGN/List/Transform.pm

   1
   2 =head1 NAME
   3
   4 CXGN::List::Transform - transform lists from one type to another
   5
   6 =head1 SYNOPSYS
   7
   8  my $tf = CXGN::List::Transform->new();
   9  if (my $transform_name = $tf->can_transform("accessions", "accession_ids")) {
  10    my $tf_list = @$tf->tranform($schema, $transform_name, $list_ref);
  11  }
  12
  13 =cut
  14
  15 package CXGN::List::Transform;
  16
  17 use Moose;
  18
  19 use Module::Pluggable require => 1;
  20
  21 =head2 can_transform
  22
  23  Usage:        my $tf_name = $tf->can_transform("accessions", "accession_ids");
  24  Desc:         ask if to types can be transformed. Returns the name of the
  25                transform, to be used with the transform() function
  26  Ret:
  27  Args:
  28  Side Effects:
  29  Example:
  30
  31 =cut
  32
  33 sub can_transform {
  34     my $self = shift;
  35     my $type1 = shift;
  36     my $type2 = shift;
  37
  38     foreach my $p ($self->plugins()) {
  39         if ($p->can_transform($type1, $type2)) {
  40             return $p->name();
  41         }
  42     }
  43     return 0;
  44 }
  45
  46 =head2 transform
  47
  48  Usage:        $tf->transform($schema, $transform_name, $list_ref);
  49  Desc:
  50  Args:         $schema (Bio::Chado::Schema)
  51                $transform_name (obtain from can_transform())
  52                $list_ref of elements to transform
  53  Returns:      a hashref with two keys, transform and missing, both
  54                of which are arrayrefs of strings.
  55  Side Effects:
  56  Example:
  57
  58 =cut
  59
  60 sub transform {
  61     my $self = shift;
  62     my $schema = shift;
  63     my $transform_name = shift;
  64     my $list = shift;
  65
  66     my $data;
  67
  68     foreach my $p ($self->plugins()) {
  69         if ($transform_name eq $p->name()) {
  70              $data = $p->transform($schema, $list);
  71         }
  72     }
  73     return $data;
  74 }
  75
  76 1;