From 2da33a66a3a5e595f2e960c03ccbe484c046f48d Mon Sep 17 00:00:00 2001
From: Production User <production@new-sgn-production.sgn.cornell.edu>
Date: Thu, 5 Jun 2014 10:00:30 -0400
Subject: [PATCH] fix BLAST backend.

---
 lib/SGN/Controller/AJAX/Blast.pm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/lib/SGN/Controller/AJAX/Blast.pm b/lib/SGN/Controller/AJAX/Blast.pm
index d400b4a60..2a8cee464 100644
--- a/lib/SGN/Controller/AJAX/Blast.pm
+++ b/lib/SGN/Controller/AJAX/Blast.pm
@@ -48,8 +48,8 @@ sub run : Path('/tools/blast/run') Args(0) {
 
     print STDERR "SEQUENCE now : ".$params->{sequence}."\n";
 
-    my $seq_count = $params->{sequence} =~ tr/\>/\>/;
-    
+    my $seq_count = $params->{sequence} =~ tr/\>/\>/; 
+    print STDERR "SEQ COUNT = $seq_count\n";
     my ($seq_fh, $seqfile) = tempfile( 
 	"blast_XXXXXX",
 	DIR=> $c->get_conf('cluster_shared_tempdir'),
@@ -95,7 +95,6 @@ sub run : Path('/tools/blast/run') Args(0) {
 		 
 		 try {
 		     while ( my $s = $i->next_seq ) {
-
 			 $s->length or $c->throw(
 			     message  => 'Sequence '.encode_entities('"'.$s->id.'"').' is empty, this is not allowed by BLAST.',
 			     is_error => 0, 
-- 
2.11.4.GIT