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pom-trakem2-1.4.0
2012-06-20
Stephan Saalfeld
M
e
rge branch 'mast
e
r' of
s
sh://
r
epo
.
or
.
cz/srv
/
git
/
t
rakem2
commit
|
commitdiff
|
tree
2012-06-20
St
e
phan Saalfe
l
d
fixed range c
h
e
c
k in laye
r
alignme
n
t
commit
|
commitdiff
|
tree
2012-06-14
S
t
ephan
Saalfel
d
fixe
d
condition c
h
eck in Align Laye
r
s for re
g
ularization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan
S
a
alfeld
M
e
rge branch 'master' into
r
e
gula
r
ized-affine
commit
|
commitdiff
|
tree
2012-06-08
S
t
e
pha
n
Saalfe
l
d
do n
o
t con
s
ider di
s
connected
t
iles
commit
|
commitdiff
|
tree
2012-06-08
S
t
e
ph
a
n Saalf
e
ld
Merge branch 'regularized-af
f
in
e
'
o
f ssh://repo
.
o
r
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
S
t
ephan Sa
a
lfeld
pre-
a
lign gr
a
phs an
d
m
a
tch only ove
r
l
apping
t
il
e
s
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
pre-al
i
gn gr
a
phs and mat
c
h only overlap
p
ing tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan
S
a
alfel
d
initialize
T
ile mo
d
els and
n
o
t
only
patches in alignGraph
s
commit
|
commitdiff
|
tree
2012-06-08
St
e
phan Sa
a
lfeld
changed ali
g
n
Gra
p
hs input collect
i
ons from Set
t
o Iterable
commit
|
commitdiff
|
tree
2012-06-08
Stephan
Sa
a
l
feld
m
a
ke sure that static param
e
ters do not ov
e
r
ride eac
h
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
re
m
ove
spuriou
s
i
mport
commit
|
commitdiff
|
tree
2012-06-05
Ste
p
han Sa
a
l
f
e
l
d
workaround Or
a
c
l
e ja
v
ac
g
en
e
ri
c
s
issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
multi-layer-mos
a
ic uses Param/Para
m
O
ptimi
z
e
.
setup(Stri
n
g
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
tep
h
an Saalfeld
montage
l
ayers uses Pa
r
a
m
O
p
timize
.
setup instea
d
of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan
Saalfeld
do not fix a
r
a
n
dom tile if
none is fixed
commit
|
commitdiff
|
tree
2012-05-29
Step
h
an
S
aalfeld
Co
n
densed
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
Stephan Saalfeld
Added
.
mailma
p
commit
|
commitdiff
|
tree
2012-05-21
Ste
p
ha
n
S
aalfel
d
Merge
branch 'master' into regularized-affine
commit
|
commitdiff
|
tree
2012-05-21
Step
h
an
Saalfeld
added *None* field to layer range r
e
ference selection
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
split Align
.
ParamO
p
timize
dialogs in pieces that
f
it
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
St
e
p
h
an Saalfeld
adde
d
GenericAffineT
i
le2D
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saa
l
fel
d
ge
n
e
r
al
i
zed Abstr
a
ctAf
f
i
n
eTile2D g
e
neric p
a
r
a
meter
commit
|
commitdiff
|
tree
2012-05-15
S
t
ephan Saa
l
feld
t
r
ack refactoring in m
p
icbg
.
commit
|
commitdiff
|
tree
2012-05-09
S
tephan
S
aalfeld
added
r
e
g
u
lari
z
ed
affine layer alignment,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Sa
a
lfel
d
f
i
xed createIma
g
e
(
): use
p
remultipl
i
ed raster
commit
|
commitdiff
|
tree
2012-03-27
S
t
ephan
S
aalfeld
do not prin
t
t
h
e mipmap scale
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
han Saalfeld
for now,
d
o not use pre-mul
t
iplied alpha since it does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
F
ixed
wrong
p
ainting of
P
atches when using a
d
ownsampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
phan Saalfeld
DownsamplerMipMaps n
o
w consistent
l
y
uses combined downsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
han
Saalfeld
fixed Downsa
m
p
lerMipMaps bl
e
ndi
n
g m
e
r
ged alpha into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
S
aalf
e
ld
Downsampler
t
es
t
still
s
h
o
ws it being significan
t
l
y
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Fixed Downsampler: range ch
e
ck in byte conv
e
rsion was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saal
f
el
d
Merge br
a
nch 'int
e
g
ral' of ss
h
:
//rep
o
.
o
r
.
cz
/
srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saa
l
feld
a
d
ded m
i
ssing packag
e
to F
a
kefile
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalfeld
Merge
b
ranch '
m
a
s
ter' of ssh:/
/
repo
.
or
.
cz/srv/g
i
t/trak
e
m2
commit
|
commitdiff
|
tree
2012-03-08
Stephan
S
aalfe
l
d
fix local scale est
i
mate
commit
|
commitdiff
|
tree
2012-03-07
S
tep
h
an Saalfe
l
d
add
e
d g
e
tLocalScale(x,
y
) method to Patch
commit
|
commitdiff
|
tree
2012-03-07
St
e
pha
n
Saalfel
d
patch does not propagat
e
No
n
InvertibleMod
e
lException
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
S
t
ephan S
a
a
l
feld
Merg
e
branch 'master' of ss
h
://rep
o
.
or
.
cz/srv/
g
it/tra
k
e
m2
commit
|
commitdiff
|
tree
2012-03-07
Steph
a
n
S
aalfeld
added metho
d
s
to
f
etch the closest triangle of a
transfor
m
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Stephan
Sa
a
l
f
eld
in the middle of
.
.
.
amend with
f
inal com
m
i
t
commit
|
commitdiff
|
tree
2012-02-27
Steph
a
n Saalf
e
ld
d
e
monstrate byte conversion in
an
e
x
t
ra loop to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Ste
p
han Saalfeld
Merge
branch 'integral
'
of ssh:/
/
re
p
o
.
o
r
.
cz/s
r
v/
g
i
t
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
St
e
p
han Saalfeld
Downsampler
fi
n
ish
e
d
.
I have
t
ested several
v
a
r
iants
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Stephan Saal
f
eld
experimantal commit:
commit
|
commitdiff
|
tree
2012-02-23
S
t
ephan Saalfeld
Merge bra
n
ch 'int
e
gral' of ssh
:
//re
p
o
.
or
.
c
z
/
srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
S
tephan Saa
l
f
e
ld
Down
s
ampler with
a
lpha-chan
n
els renderin
g
into byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
Step
h
an Saalf
e
l
d
Merge branch
'
maste
r
' of ssh
:
//repo
.
or
.
cz/sr
v
/git/tr
a
k
em2
commit
|
commitdiff
|
tree
2012-02-22
Ste
p
han Saa
l
feld
set inte
r
polation mod
e
to actua
l
ly interpolat
e
m
a
sks
commit
|
commitdiff
|
tree
2012-01-06
Stephan Saalfeld
Fixed bug 392,
t
he prop
e
r
t
y
n_mipmaps_
t
hreads must
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfeld
Elastic
M
ont
a
g
e
: do not visu
a
lize
commit
|
commitdiff
|
tree
2011-11-07
Stepha
n
Saa
l
f
e
ld
Merge branc
h
'maste
r
'
o
f s
s
h://repo
.
or
.
cz
/
srv/git/t
r
akem2
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfeld
A
lignT
a
s
k
:
really skip layers annotation
-
w
i
t
h
l
i
n
k
ed
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Ste
p
han Saal
f
eld
ElasticMontage: respe
c
t fixed Patches
(
fr
o
m se
l
e
c
tion
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan S
a
alf
e
ld
r
e
named shading loca
l
parame
t
er
commit
|
commitdiff
|
tree
2011-11-07
Stepha
n
Saalfeld
Attempt
t
o
fix bu
g
380
.
Please ch
e
ck if t
h
e behavior
commit
|
commitdiff
|
tree
2011-11-07
Stephan Sa
a
lfeld
a
dded
c
o
m
ments a
n
d fixed typo
commit
|
commitdiff
|
tree
2011-10-22
S
tephan
S
aalfeld
Ela
s
ticAli
g
nment/Mo
n
ta
g
e
:
commit
|
commitdiff
|
tree
2011-10-19
Stephan Saalfe
l
d
M
erge branch 'mas
t
er' of s
s
h://re
p
o
.
or
.
cz/s
r
v/git/t
r
akem2
commit
|
commitdiff
|
tree
2011-10-12
S
tephan Saalfeld
Merge branch 'master' o
f
ssh:
/
/repo
.
or
.
cz/srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2011-10-10
Steph
a
n
Saalfeld
Merge
b
r
anch 'mast
e
r'
o
f ssh
:
//repo
.
o
r
.
cz
/
srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalfeld
A
l
ign uses U
t
ils
.
log instea
d
of IJ
.
log
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalf
e
ld
Di
s
tortion correc
t
ion us
e
s Util
s
.
log instead of
I
J
.
log
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalf
e
ld
log
time a
n
d d
a
t
e
pear each log pr
i
nt
commit
|
commitdiff
|
tree
2011-10-10
Ste
p
han
S
a
alfe
l
d
added experimental 16bit
u
nsigned tiles export
e
r
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalfe
l
d
Transfor
m
Me
s
hMa
p
pi
n
gWithMask
s
got met
h
ods
and
r
endering
commit
|
commitdiff
|
tree
2011-10-01
Ste
p
han Saal
f
eld
make IJ
.
log
t
o Utils
.
log in Ela
s
ticLayerAlignm
e
nt
commit
|
commitdiff
|
tree
2011-09-29
Step
h
a
n
Saalfeld
add
e
d block radius as p
a
rameter to
commit
|
commitdiff
|
tree
2011-09-28
Stephan Saalfe
l
d
ElasticLayer
A
lign
m
e
n
t v
i
sualization back to false
commit
|
commitdiff
|
tree
2011-09-27
Stephan Saalf
e
ld
springmesh damp b
a
ck to normal, not much
commit
|
commitdiff
|
tree
2011-09-27
Stephan
S
aal
f
eld
Merge branch 'master' o
f
ssh:
/
/re
p
o
.
or
.
cz/srv/
g
it/tra
k
em2
commit
|
commitdiff
|
tree
2011-09-27
Stephan Saa
l
feld
added loc
a
l
smoothne
s
s
filter to elastic layer
commit
|
commitdiff
|
tree
2011-09-27
Step
h
an Sa
a
lfeld
added
a meth
o
d to cre
a
te an AbstractModel using an
commit
|
commitdiff
|
tree
2011-09-25
Stephan
S
aa
l
feld
fix
e
d wrong na
m
ings from
l
a
s
t co
m
mit
commit
|
commitdiff
|
tree
2011-09-24
S
t
eph
a
n Sa
a
lfe
l
d
added transf
e
r modes for CoordinateTransforms,
commit
|
commitdiff
|
tree
2011-09-24
Stephan Saal
f
eld
a
d
d
e
d a method to
p
r
e-append
a Coor
d
inateT
r
ansform
commit
|
commitdiff
|
tree
2011-09-15
S
t
ep
h
an Saal
f
eld
re
m
ove
cl
u
t
t
e
r
commit
|
commitdiff
|
tree
2011-09-15
S
tephan
Saalfeld
Merge
b
r
a
nc
h
'master'
i
nto e
l
astic-align
commit
|
commitdiff
|
tree
2011-09-15
S
t
ephan
Saalfeld
small declutter NonLinearTransformMode
commit
|
commitdiff
|
tree
2011-09-14
Stephan Saalfe
l
d
M
e
rge
branch 'elastic-a
l
ign
'
o
f
ssh://repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Stephan S
a
alfeld
TransformMeshMappingWithMasks mult
i
-
threade
d
commit
|
commitdiff
|
tree
2011-09-14
Stephan Saalfeld
make mesh resol
u
tio
n
a Patch parameter
i
n
s
t
ead o
f
32
commit
|
commitdiff
|
tree
2011-09-12
Stephan Saalfe
l
d
Merge branch
'
master' into elast
i
c-align
commit
|
commitdiff
|
tree
2011-09-12
St
e
phan Saalfeld
Mer
g
e
b
r
anch 'elastic-align' of ssh://repo
.
or
.
c
z/srv
.
.
.
commit
|
commitdiff
|
tree
2011-09-12
Stephan Saalfeld
separate SIFT parameter dialog
commit
|
commitdiff
|
tree
2011-09-06
Stephan
S
a
alfeld
fixed Elastic Mo
n
t
a
ge
u
sing
th
e
wrong lin
e
a
r
model
.
.
.
commit
|
commitdiff
|
tree
2011-09-01
S
tephan S
a
alfeld
fixe
d
Downsampler doing one pix
e
l less than
i
t
s
ho
u
ld
commit
|
commitdiff
|
tree
2011-08-30
St
e
phan Saalf
e
ld
El
a
sticMontage: swi
t
c
h
off
v
isu
a
l
i
zation again
commit
|
commitdiff
|
tree
2011-08-30
St
e
phan Saalf
e
ld
fi
x
G
a
ussian mipmap
generation in FSLoader
:
commit
|
commitdiff
|
tree
2011-08-30
Stephan Saalfeld
FloatProcesssorT2 g
o
t a me
t
hod for
d
ownsamp
l
i
ng b
y
.
.
.
commit
|
commitdiff
|
tree
2011-08-29
S
t
e
ph
a
n Saalfeld
u
p
d
a
ted
serial
u
id
commit
|
commitdiff
|
tree
2011-08-29
St
e
phan Saalf
e
l
d
added an 1/2 downsa
m
pler
f
or all ImageProcessor types
.
.
.
commit
|
commitdiff
|
tree
2011-08-29
Stephan Saalfe
l
d
ElasticMontage:
commit
|
commitdiff
|
tree
2011-08-29
S
tepha
n
Saalfeld
fix copy
/
paste bug in
E
l
asticMo
n
tage th
a
t
made image2
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
S
t
e
p
h
an Saalfeld
ElasticLayerAlignm
e
nt: apply a copy of the
l
ayer transform
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
Step
h
an Saalfeld
Override applyI
n
Place method in ML
S
T an
d
MLST2,
sync
h
ronizin
.
.
.
commit
|
commitdiff
|
tree
2011-08-23
S
t
e
p
h
a
n
S
aalfel
d
Elastic
L
ayer
A
lignment: apply t
r
ansformations
u
sing
.
.
.
commit
|
commitdiff
|
tree
2011-08-22
Ste
p
ha
n
S
a
a
lfeld
Fixed
inaccura
t
e rendering o
f
flat images with quality
.
.
.
commit
|
commitdiff
|
tree
2011-08-22
Stephan
S
a
alfeld
Elasti
c
Mon
t
a
g
e: do not visualize (can be harmful when
.
.
.
commit
|
commitdiff
|
tree
next