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patch does not propagate NonInvertibleModelException from TransformMesh
2012-03-07
St
e
phan S
a
alfeld
patch does not prop
a
gate Non
I
nv
e
r
tibleModelException
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfel
d
Merge br
a
nch
'maste
r
' of ssh
:
/
/repo
.
or
.
c
z
/srv/git/
t
rakem2
commit
|
commitdiff
|
tree
2012-03-07
S
t
e
phan Saalfeld
added methods to fe
t
ch the c
l
osest triangle of a
tr
a
nsf
o
rm
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
Step
h
an
S
aalfe
l
d
Merge branch 'ma
s
ter' of ssh://rep
o
.
or
.
cz/srv
/
git/trakem2
commit
|
commitdiff
|
tree
2012-02-22
Stephan
Saalfel
d
set i
n
terpolation
mode t
o
actually interpolate mas
k
s
commit
|
commitdiff
|
tree
2011-10-01
Ste
p
h
an Saalfeld
make IJ
.
log
t
o Utils
.
log in
E
l
asticLay
e
rAlignmen
t
commit
|
commitdiff
|
tree
2011-08-10
Stephan
S
aalfeld
use MovingL
e
a
s
tSquaresTran
s
form2 in ElasticL
a
yer
A
lignme
n
t
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saa
l
feld
use MovingLeastSquaresTransfo
r
m2 in
E
lasticMontage
commit
|
commitdiff
|
tree
2011-08-10
Stephan
Saalfeld
use MovingLeastS
q
uare
s
Tr
a
nsform2 for
warpi
n
g
i
n m
u
lti
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
use MovingLeastSquaresTransf
o
rm2 in
NonLi
n
ea
r
T
r
ansformM
o
de
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
Added M
o
vingLe
a
s
tSqua
r
esT
r
an
s
form2 extend
i
ng
commit
|
commitdiff
|
tree
2011-08-07
Steph
a
n
S
aalfeld
E
lasticLayerAl
i
g
n
ment: W
h
en transferri
n
g layer transfo
r
matio
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
Stephan Saalfe
l
d
flush cache betw
e
en layer exports (the cac
h
e is ot
h
erwi
s
e
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan Saa
l
feld
free
memo
r
y
before
r
unnin
g
memory demand
i
ng tasks in
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
S
t
ep
h
an Saalfel
d
f
i
xed bug in linearLayerAlignment, cal
c
ula
t
e and a
p
p
ly
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
Stephan
Sa
a
lfeld
f
l
ush image
cache
m
emory
before d
o
ing a m
o
ntage
commit
|
commitdiff
|
tree
2011-06-29
Stephan Saalfeld
Ela
s
ticMontage:
commit
|
commitdiff
|
tree
2011-06-29
Stephan Saalfeld
Merge
branc
h
'master
'
into
e
lastic-align
commit
|
commitdiff
|
tree
2011-06-28
Step
h
an Saalf
e
l
d
M
e
r
ge branch 'mast
e
r' in
t
o elastic-align
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfeld
A
d
ded `se
e
ms-to-work' elas
t
ic montagi
n
g
.
M
issing parts
are
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfeld
* made Pat
c
h
.
PatchIm
a
ge a
static class (i
t
h
a
s no references
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Stephan Saalfeld
added Pair t
o
Abstract
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saalfel
d
Ali
g
n
.
j
a
va
:
moved twice implemented Model fi
t
ting and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Steph
a
n Saalfeld
ElasticA
l
ign uses the local siftParam for identifying
commit
|
commitdiff
|
tree
2011-06-23
S
t
ephan
Saalfeld
Tran
s
formMeshMapp
i
n
gW
i
thMask r
o
unds
triangel bound
i
n
g
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
S
t
ephan Saa
l
feld
attempt to get shared fu
n
ction for layer alignment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Ste
p
han Saalf
e
ld
t
itled m
o
ntage
dialog `
M
ontage'
c
onsistently with the
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Step
h
an S
a
alfeld
Fixed Thread in
t
erruption in Align
.
connec
t
T
ilePairs
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Steph
a
n Saalfeld
`Montage
all images in this layer':
commit
|
commitdiff
|
tree
2011-06-17
Ste
p
h
a
n
Saa
l
feld
ElasticAl
i
gn fixes:
commit
|
commitdiff
|
tree
2011-06-16
S
t
e
p
han Saalfeld
Merge branch 'mas
t
er' into el
a
stic-alig
n
commit
|
commitdiff
|
tree
2011-06-16
Ste
p
h
an
Sa
a
lfeld
comme
n
t test rpint
commit
|
commitdiff
|
tree
2011-05-27
Steph
a
n
S
aalfeld
st
a
rted with Elasti
c
Alignment,
l
ayer a
l
ignm
e
n
t
already
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Stepha
n
Saalfeld
Merge
branch 'mas
t
er' into
m
pi
c
bg-mo
d
el-interface
commit
|
commitdiff
|
tree
2010-11-20
Steph
a
n Sa
a
l
feld
trackin
g
mpi
c
bg
m
ode
l
-interface
commit
|
commitdiff
|
tree
2010-08-18
S
tephan S
a
a
lf
e
ld
mpicbg
.
trakem2
.
transform
.
TransformMesh extra
p
olates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Fixed bug 202
commit
|
commitdiff
|
tree
2010-08-16
S
t
ephan Saalfeld
* a
d
d minimal absolu
t
e n
u
mbe
r
of
inliers as
a
p
a
r
a
meter
commit
|
commitdiff
|
tree
2010-08-16
Stephan Sa
a
l
feld
Me
r
ge bra
n
ch 'master' in
t
o reject
c
onstantba
c
kground
commit
|
commitdiff
|
tree
2010-08-16
Steph
a
n Saalfeld
M
erge branch 'mast
e
r' of ssh://repo
.
or
.
cz/srv/git/trake
m
2
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfeld
Merge branch 'rejectconstantbackground'
of
s
sh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
Step
h
an S
a
alfeld
fi
n
ding connec
t
e
d tiles
m
o
v
e
d into
base cl
a
s
s
commit
|
commitdiff
|
tree
2010-08-07
St
e
phan Saa
l
f
eld
u
se out
l
ier filter
in optimizer
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfeld
findin
g
con
n
ected tiles moved into base cla
s
s
commit
|
commitdiff
|
tree
2010-08-06
S
t
ephan S
a
alfeld
Merge branch 'r
e
je
c
t
c
o
n
stan
t
backgroun
d
' of ssh://
r
epo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
Stephan
Saalf
e
ld
Fix
w
r
o
ng parameter c
h
o
ice
i
n AlignTask
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saalfeld
Merge branch
'master' into re
j
ectconstantbackground
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saalfeld
e
xtended verbos
i
t
y
of the t
i
le matching
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saalf
e
ld
Added a filter to reject con
s
tant ba
c
k
g
roun
d
p
atterns
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Steph
a
n
Saalfeld
Merge branc
h
'master' of s
s
h://repo
.
o
r
.
c
z
/srv/git/trakem2
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
R
e
cove
r
e
d the most im
p
ortatn o
f
Ign
a
ci
o
's previous
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfel
d
Merge br
a
nch 'master' in
t
o le
n
s-m
o
del
commit
|
commitdiff
|
tree
2010-03-19
Stepha
n
Saalf
e
ld
Created Polynom
i
alModel2D, a wra
p
per for Ver
e
na Kaynig's
commit
|
commitdiff
|
tree
2010-03-18
Stephan Saalfeld
A
d
d
ed
t
he maximal acce
p
ted factor to mean
P
ointMatch
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
Stephan Saalfeld
R
e
m
ove ma
t
ches with large displacement from
t
h
e
c
o
nfiguration
commit
|
commitdiff
|
tree
2010-02-23
S
tephan
S
aalfel
d
fixe
d
c
a
libration of scal
e
d snapshots whe
n
export
i
ng
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Stephan Saalfeld
fixed calibration of scaled snapshots
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfeld
A
l
ignTask: w
h
en de
f
orming, tiles ARE a
l
ready
in place
commit
|
commitdiff
|
tree
2010-02-19
Stephan Sa
a
lfeld
AlignTask: Fi
x
ed missuse of
a
static
variable
.
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfeld
Remove the nev
e
r used sh
a
ke
m
ethod from abstrac
t
Mo
d
el
.
commit
|
commitdiff
|
tree
2010-02-10
Stephan Saalfeld
Fixed
a
bug
t
hat made the origi
n
al image appea
r
beh
i
nd
commit
|
commitdiff
|
tree
2010-02-09
Step
h
an S
a
alfeld
Syn
c
hro
n
ized screenPatchRanges
commit
|
commitdiff
|
tree
2010-02-09
Ste
p
han Saalfel
d
minor cleanup in lenscorrect
i
on
commit
|
commitdiff
|
tree
2010-02-09
St
e
phan Saal
f
eld
Adde
d
Tr
a
nsformMeshMappingWithMasks f
o
r more effici
e
nt
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saal
f
eld
N
o
nLinearTransformMode ca
n
p
r
opa
g
ate the transformation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
St
e
phan Saalfeld
F
o
r n
o
w,
d
on't scale maxEpsilon
.
commit
|
commitdiff
|
tree
2010-02-07
Steph
a
n Saalfeld
Align Mul
t
i-
L
ayer-Mo
s
aic: U
s
e up to 2x m
a
xOctaveSize
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
S
t
ephan Saal
f
eld
Finished
t
he deform operation to consider all g
r
aphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
S
t
ephan Sa
a
lfeld
Fixed Float
.
MIN_VALUE to
F
loat
.
MAX_VALUE where i
t
remain
e
d
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Ste
p
han Saalfeld
alignMulti
L
ayerMosaic
f
i
nally
u
ses gr
a
ph-
b
as
e
d pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
St
e
phan Saalfeld
changed
d
e
f
ault value of SIFT
.
max
O
ctaveSize = 600
commit
|
commitdiff
|
tree
2010-01-29
Stephan S
a
al
f
eld
fixed p
a
irOverlap
p
ingTiles( List, List, List[] )
commit
|
commitdiff
|
tree
2010-01-28
Step
h
an Saalfeld
added corresponde
n
ce weight as a parameter to Alig
n
.
.
.
commit
|
commitdiff
|
tree
2009-11-05
St
e
phan Saalfeld
Me
r
g
e
bra
n
ch 'master
'
into bu
n
war
p
j
commit
|
commitdiff
|
tree
2009-11-04
Stephan Saalfe
l
d
M
erge branch '
m
aster' into bunwarpj
commit
|
commitdiff
|
tree
2009-11-03
Stephan
Saalfeld
Fi
x
ed Comp
o
siteModes to w
o
r
k
in the
f
ollowing configurations
commit
|
commitdiff
|
tree
2009-11-03
Steph
a
n Saalfel
d
Revert "Work around ann
o
ying bug in G
r
aphics2
D
,
in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Ste
p
h
a
n
S
a
a
lfeld
Fixed C
o
mpositeMo
d
e
s t
o
work in
t
h
e
fo
l
low
i
ng config
u
rations
commit
|
commitdiff
|
tree
2009-11-03
S
t
ephan Saalfeld
Separ
a
ting
A
lignLaye
r
sTas
k
f
r
o
m AlignTask
.
commit
|
commitdiff
|
tree
2009-11-03
Steph
a
n
S
a
alfeld
Re
v
e
r
t "Work
a
round an
n
o
y
ing bug in Graphics
2
D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saa
l
feld
Merge br
a
nch 'ma
s
ter' into compos
i
te-modes
commit
|
commitdiff
|
tree
2009-11-03
Stepha
n
Saal
f
eld
A
d
d
ARGBComposi
t
e can h
a
ndle i
m
a
ge with n
o
alpha
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
A
d
d
ed a comment in
Align
commit
|
commitdiff
|
tree
2009-10-14
S
tephan Saalfeld
refactored a misnamed meth
o
d an
d
statified some parameters in
commit
|
commitdiff
|
tree
2009-10-14
S
t
ephan Saalfeld
s
y
n
c
hro
n
i
z
e
d potentially
c
oncu
r
rency unsafe match inserti
o
n
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Step
h
a
n S
a
alfeld
F
i
x
e
d the geome
t
ry issues and add
e
d su
p
port f
o
r
all
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Step
h
an S
a
al
f
eld
Catch
i
ng an
d
handling OutOfM
e
mor
y
Err
o
rs in
F
eatureExtraction
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalfeld
Cosmetics i
n
A
l
ign
T
ask
a
nd SimilarityModel2
D
commit
|
commitdiff
|
tree
2009-10-08
Ste
p
h
a
n
S
a
alfeld
l
e
nsco
r
rection stops now
l
a
ter but lat
e
st after the
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
S
t
ephan Saalfeld
Merge branch
'
master' of ss
h
://repo
.
or
.
cz/srv
/
git/trakem2
commit
|
commitdiff
|
tree
2009-10-07
Stephan S
a
alfeld
Merge branch 'm
a
ster' of s
s
h://re
p
o
.
or
.
cz/sr
v
/git/trakem2
commit
|
commitdiff
|
tree
2009-10-07
Step
h
an Saalfe
l
d
Fix 0
.
5g
r
ey back
g
round
f
or BytePro
c
ess
o
rs in
commit
|
commitdiff
|
tree
2009-09-24
Ste
p
han Saalfeld
Me
r
ge branch 'master' of ssh
:
//repo
.
or
.
cz/srv/git/
t
rakem2
commit
|
commitdiff
|
tree
2009-09-23
Stephan Saalfeld
Sa
v
i
ng a l
o
t of RAM in visualiz
i
ng t
h
e lens distortion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
han Saalfeld
M
erge b
r
anch 'stack'
i
nto align
commit
|
commitdiff
|
tree
2009-09-17
Stephan
Saalfe
l
d
Hopefully fixe
d
the scaling in
S
tack
commit
|
commitdiff
|
tree
2009-09-17
Stephan
Saalf
e
ld
Merge branch 'stack'
into align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfel
d
Merge branch 'st
a
c
k' of
s
s
h://repo
.
or
.
cz/srv/
g
it/
t
ra
k
em2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
S
t
ep
h
an Saalfel
d
Merg
e
branch 'stack' into align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
separ
a
ted t
h
e
actu
a
l alignLa
y
ers
L
inearly job from
t
he
.
.
.
commit
|
commitdiff
|
tree
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