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ElasticMontage: do not visualize (can be harmful when doing a series)
2011-08-22
St
e
phan Saalfeld
Elasti
c
Mon
t
age: do not v
i
sualiz
e
(can be ha
r
mful whe
n
.
.
.
commit
|
commitdiff
|
tree
2011-08-20
Ste
p
han
S
aalfeld
Patc
h
ed patch painting such th
a
t it confo
r
ms to the
.
.
.
Signed-off-by:
Stephan Saalfeld
<saalfeld@mpi-cbg.de>
commit
|
commitdiff
|
tree
2011-08-10
St
e
phan
Sa
a
lfeld
use M
o
vingLeastSquaresT
r
an
s
form2 in Elas
t
icLaye
r
Alignment
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
use MovingLeastSquar
e
sTran
s
for
m
2
i
n
E
lasti
c
Montag
e
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalf
e
ld
use MovingLe
a
s
t
Squa
r
esTransf
o
rm2 for warping in multi
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
Stephan S
a
alfeld
u
s
e MovingLeastS
q
uaresTransform2 i
n
NonLinearTransformM
o
de
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saa
l
feld
Added M
o
vingLeastSquaresTra
n
sform2
e
xt
e
n
d
ing
commit
|
commitdiff
|
tree
2011-08-07
Stephan Saalfeld
Elast
i
cLayerAl
i
gnment: When tr
a
nsferring
l
ayer transformatio
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
Stepha
n
Saalfeld
flush cache between layer exports
(the cache is otherwise
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan Saalfeld
free memory befor
e
runnin
g
m
emory dem
a
nding tasks
i
n
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
St
e
phan Saalfeld
fix
e
d bug in linearL
a
y
e
rA
l
ignment,
cal
c
u
late and
apply
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
Stepha
n
S
a
alfe
l
d
flush image cache memory before doing a montage
commit
|
commitdiff
|
tree
2011-06-29
S
t
ephan Saalfeld
ElasticMontage:
commit
|
commitdiff
|
tree
2011-06-29
Stephan Saalfeld
Mer
g
e branch 'master
'
i
nto el
a
st
i
c-align
commit
|
commitdiff
|
tree
2011-06-28
S
t
e
phan
S
a
a
lfe
l
d
M
er
g
e branch
'
m
aster' into e
l
astic-align
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfeld
Added `seems-to-wo
r
k' el
a
stic montaging
.
M
i
ss
i
ng parts are
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfeld
*
made Pa
t
ch
.
PatchIm
a
ge a st
a
tic class (it h
a
s
no ref
e
rences
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Stephan Sa
a
lfel
d
added
P
air
to
Abstra
c
t
commit
|
commitdiff
|
tree
2011-06-23
S
t
e
phan Saalfeld
Align
.
ja
v
a: moved twic
e
implemented Model fitting and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Steph
a
n Saalfeld
ElasticAlign uses the local siftPara
m
for identifying
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saalfeld
TransformMeshMap
p
ingWithMa
s
k rounds triange
l
bounding
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan
S
a
a
l
f
eld
attemp
t
to get shared function for layer alignm
e
nt
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan
Saalfeld
titled montage dial
o
g
`Mon
t
a
g
e' consistently wit
h
t
he
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Ste
p
han S
a
a
l
feld
Fi
x
ed Th
r
ead interruption i
n
A
li
g
n
.
c
o
n
n
e
c
t
TilePairs
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Stephan Saa
l
feld
`Montage
a
l
l images in th
i
s la
y
er
'
:
commit
|
commitdiff
|
tree
2011-06-17
Steph
a
n Saalfeld
El
a
sticAlign
f
ixes:
commit
|
commitdiff
|
tree
2011-06-16
Stepha
n
Saalfeld
Merge bran
c
h 'master' i
n
to elastic-align
commit
|
commitdiff
|
tree
2011-06-16
Stepha
n
Saalfeld
comment te
s
t rpint
commit
|
commitdiff
|
tree
2011-05-27
Stephan S
a
alfeld
s
t
arte
d
with Elastic Al
i
gnment, layer ali
g
nm
e
nt already
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
S
t
ephan Saalfeld
M
e
rg
e
bra
n
ch 'maste
r
' into mp
i
cbg
-
model
-
interface
commit
|
commitdiff
|
tree
2010-11-20
Stephan Saalf
e
ld
tracking mpicbg
model-interface
commit
|
commitdiff
|
tree
2010-08-18
Stepha
n
Saa
l
feld
mpicbg
.
tra
k
em2
.
t
r
ansfor
m
.
Transfo
r
mMesh ex
t
rapolates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Stephan
Saalfeld
Fixed bug 202
commit
|
commitdiff
|
tree
2010-08-16
St
e
phan
Saa
l
f
e
l
d
* add minimal absolute num
b
er of inliers as a par
a
meter
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saa
l
feld
M
erge branch 'ma
s
te
r
' in
t
o reje
c
tc
o
ns
t
antback
g
round
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
M
e
rge br
a
nch
'master' o
f
ssh://repo
.
or
.
cz/srv/g
i
t
/
trakem2
commit
|
commitdiff
|
tree
2010-08-07
Stephan
Saalfeld
Merge br
a
nch '
r
eject
c
onstan
t
background
'
of ssh://
r
epo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
S
t
ep
h
an Saa
l
fel
d
f
indi
n
g co
n
nected til
e
s
moved i
n
to base clas
s
commit
|
commitdiff
|
tree
2010-08-07
Step
h
a
n
Saalfeld
use
o
ut
l
ier
filt
e
r in opt
i
mizer
commit
|
commitdiff
|
tree
2010-08-07
Ste
p
han Saalfeld
findin
g
connected
t
il
e
s
mov
e
d into ba
s
e class
commit
|
commitdiff
|
tree
2010-08-06
S
t
eph
a
n Saalfe
l
d
Merge branch
'
rejectconstantbackground' of ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
S
t
e
p
han Saalfe
l
d
Fi
x
w
r
ong parameter choice
in AlignTask
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saalfeld
Mer
g
e branch 'master' int
o
r
e
ject
c
onstantbac
k
ground
commit
|
commitdiff
|
tree
2010-08-05
Steph
a
n Saalfeld
extended verbosity
of th
e
tile
matchin
g
commit
|
commitdiff
|
tree
2010-08-05
S
t
ep
h
an Saalfeld
Added
a
filter to rejec
t
constant backg
r
oun
d
patterns
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan
Saalfeld
Me
r
ge
b
ranch '
m
ast
e
r
'
of ssh://repo
.
or
.
c
z
/srv/git/trakem2
commit
|
commitdiff
|
tree
2010-03-19
S
tephan Saalfeld
Recover
e
d the most importatn of Ignacio's previous
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Merg
e
branch
'ma
s
ter' into lens-model
commit
|
commitdiff
|
tree
2010-03-19
St
e
phan Saalf
e
ld
Created PolynomialModel2D, a
w
rapper for Verena Kaynig's
commit
|
commitdiff
|
tree
2010-03-18
St
e
p
han Sa
a
lfeld
Added the ma
x
imal accept
e
d
fac
t
or to
m
ea
n
PointM
a
tch
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
S
t
ephan Saalfeld
Remove matches with la
r
ge dis
p
lacem
e
nt from
t
he configuratio
n
commit
|
commitdiff
|
tree
2010-02-23
Stephan S
a
alfeld
fixed calibr
a
ti
o
n of sca
l
ed
s
nap
s
hots wh
e
n exporting
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Steph
a
n Saalfeld
fixed ca
l
ibration of
s
c
aled s
n
apshots
commit
|
commitdiff
|
tree
2010-02-19
Step
h
an Saalf
e
ld
AlignTa
s
k: wh
e
n d
e
forming,
t
iles ARE already in place
commit
|
commitdiff
|
tree
2010-02-19
S
tephan Saal
f
eld
AlignTask: Fi
x
ed miss
u
se of a static
var
i
able
.
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfeld
Remove
t
he nev
e
r used sh
a
ke
meth
o
d
f
rom abstract Model
.
commit
|
commitdiff
|
tree
2010-02-10
St
e
phan Saal
f
eld
F
i
xed a
bug tha
t
made the
o
rig
i
n
a
l
i
mage appear be
h
ind
commit
|
commitdiff
|
tree
2010-02-09
Stephan
S
aalf
e
ld
Sy
n
chron
i
zed scree
n
Patch
R
anges
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalf
e
ld
mino
r
clea
n
up in l
e
nscorrect
i
on
commit
|
commitdiff
|
tree
2010-02-09
St
e
phan Saalfeld
Add
e
d Tra
n
sfo
r
mMesh
M
appingWithMasks for more eff
i
cient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalfel
d
NonLinearTra
n
sfo
r
mM
o
de c
a
n
p
ro
p
agate t
h
e
t
ran
s
f
o
rmation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan
Saalfeld
For now, don't sca
l
e maxEp
s
il
o
n
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Saa
l
feld
Align M
u
lti-Layer-Mosa
i
c
:
Use up to 2x maxOctaveSize
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Step
h
an
Saal
f
eld
F
i
nished t
h
e deform operatio
n
to cons
i
der all graphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan S
a
alf
e
ld
F
ixed Float
.
M
IN
_
VALUE to F
l
oat
.
MA
X
_
V
A
LUE where it rema
i
ned
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfeld
alig
n
M
ultiLay
e
r
M
osa
i
c finally uses graph-ba
s
ed pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stepha
n
S
a
alfe
l
d
changed def
a
u
l
t value of SIFT
.
maxOctaveSize
= 600
commit
|
commitdiff
|
tree
2010-01-29
Stepha
n
S
aalfeld
fi
x
ed pairOverlap
p
in
g
Tiles( List,
List, List[] )
commit
|
commitdiff
|
tree
2010-01-28
Step
h
an Saalfeld
added corr
e
s
p
ondence weight as
a
parameter to Align
.
.
.
commit
|
commitdiff
|
tree
2009-11-17
Steph
a
n S
a
alfeld
Merge bra
n
ch 'master
'
into
bunwarpj
commit
|
commitdiff
|
tree
2009-11-05
S
tephan
S
aalfeld
Merge branch 'master' into
b
u
nwarpj
commit
|
commitdiff
|
tree
2009-11-04
St
e
phan Saalf
e
ld
Merge bra
n
ch
'
master
'
into bunwa
r
pj
commit
|
commitdiff
|
tree
2009-11-03
S
tephan
Saalfeld
Fixed CompositeMod
e
s
t
o work in the fo
l
lowing
co
n
figurations
commit
|
commitdiff
|
tree
2009-11-03
S
tephan Saalfeld
Revert "Work
a
r
oun
d
a
n
noyi
n
g
b
ug in Graphics2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Fixe
d
Compos
i
teMo
d
es
t
o work in
the followi
n
g configurations
commit
|
commitdiff
|
tree
2009-11-03
Stephan Sa
a
lfel
d
S
e
parating AlignLay
e
rsTask from AlignTask
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Revert "Work around annoying bug in Graphi
c
s2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
St
e
ph
a
n Saa
l
fe
l
d
Merge
b
ranch 'master' in
t
o
c
o
mposite-modes
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saal
f
e
l
d
AddARGBCompos
i
t
e ca
n
handle
i
mage with no alpha
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan
S
aalfeld
Added a comme
n
t in Align
commit
|
commitdiff
|
tree
2009-10-14
Ste
p
h
an
Saalfeld
re
f
actor
e
d a
misname
d
method and statified
some
p
ara
m
eters in
commit
|
commitdiff
|
tree
2009-10-14
Stephan
S
aal
f
el
d
synchron
i
z
ed pote
n
tially co
n
c
u
rrency un
s
a
f
e
m
atch inse
r
tion
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Stephan Saalfe
l
d
F
i
xe
d
the
g
e
o
metr
y
iss
u
es and added support for all
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Stephan Saalf
e
ld
Catchin
g
and
h
a
n
dling OutOf
M
emor
y
Errors
i
n FeatureExtr
a
ction
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalf
e
ld
Cosmetics in Ali
g
nTask
a
nd SimilarityModel2D
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalf
e
ld
le
n
scorrection stops now la
t
er but lates
t
after
th
e
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalfeld
Merge branch
'
ma
s
ter
'
of ssh://repo
.
o
r
.
cz/
s
rv/git/tra
k
em2
commit
|
commitdiff
|
tree
2009-10-07
Stephan Saalfeld
M
erge branch 'master'
o
f
s
s
h
:
/
/
r
e
po
.
o
r
.
cz/srv/git
/
t
r
a
kem
2
commit
|
commitdiff
|
tree
2009-10-07
Stephan Saal
f
eld
Fix
0
.
5gr
e
y
b
ackgroun
d
fo
r
ByteProcessor
s
i
n
commit
|
commitdiff
|
tree
2009-09-24
Stephan
S
aalfeld
M
e
r
g
e bra
n
c
h
'ma
s
ter' of ssh://repo
.
or
.
cz/s
r
v
/git
/
trakem2
commit
|
commitdiff
|
tree
2009-09-23
Steph
a
n Saal
f
eld
Saving a lot of RAM in visualizing the
l
ens
d
istortion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
S
t
ephan Saalfeld
Me
r
ge branch 'stack' in
t
o align
commit
|
commitdiff
|
tree
2009-09-17
S
tep
h
a
n Saalfeld
H
op
e
fully fixed the scaling
in Stack
commit
|
commitdiff
|
tree
2009-09-17
S
tephan Saalf
e
ld
Merge branch
'stack'
i
nto al
i
gn
commit
|
commitdiff
|
tree
2009-09-17
Stephan Sa
a
lfeld
M
e
rge
branch 'stack' o
f
ssh
:
//
r
epo
.
or
.
cz/srv/git/tra
k
em2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
S
t
epha
n
Sa
a
lfeld
Merge branch 'stack' into ali
g
n
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
separated the actual alignLayersL
i
near
l
y
job from the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan
S
aalfeld
Load
e
r
uses db_lock
commit
|
commitdiff
|
tree
2009-09-16
Ste
p
han
Saa
l
feld
Merge bra
n
c
h 'a
l
ign' of ssh://repo
.
or
.
cz/srv/g
i
t/trake
m
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
Stephan Saal
f
eld
Fixed a bug
that pr
e
vented
the mult
i
-
l
ayer mosaicki
n
g
.
.
.
commit
|
commitdiff
|
tree
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