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fixed merge error: moved RobustNormalizeLocalContrast into its module
2012-11-07
Stephan Saalf
e
l
d
fixe
d
merge e
r
ror:
m
oved RobustNo
r
malizeLocal
C
ontrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saalfeld
multi-threaded
RobustNormalizeLocalCo
n
tr
a
st main body
commit
|
commitdiff
|
tree
2012-09-01
Stepha
n
Saalfeld
Rem
o
ved DisplayC
a
n
v
as
.
setDrawingColor(int,int,bool
e
an
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
S
t
ephan Saa
l
feld
Merge branch 'master' of
ssh://
r
e
p
o
.
o
r
.
cz/sr
v
/
g
i
t/trak
e
m
2
commit
|
commitdiff
|
tree
2012-08-31
S
t
ephan S
a
alfeld
added experi
m
enta
l
loca
l
contrast enhancer RobustNo
r
malizeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
S
tephan Saalfel
d
removed obsolete ch
o
ice f
r
om align la
y
er
s
dia
l
og
commit
|
commitdiff
|
tree
2012-06-26
S
t
ephan
S
aalfel
d
split elastic montage dia
l
og
f
or blo
c
k matching and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan
Sa
a
lfeld
Merge branch 'master' of ssh:/
/
repo
.
or
.
cz/srv/g
i
t/trakem2
commit
|
commitdiff
|
tree
2012-06-26
S
t
ephan Saalfeld
use and do not ignore al
p
ha
in
helper me
t
hod
commit
|
commitdiff
|
tree
2012-06-21
Step
h
an Saalfeld
use the new sequential d
i
alogs i
n
"mon
t
age
"
for a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Ste
p
ha
n
Saalfeld
Merge branch
'
master
'
of
s
sh://repo
.
or
.
cz/srv/git
/
trakem2
commit
|
commitdiff
|
tree
2012-06-20
St
e
phan Saalf
e
ld
fixed
r
ange check in layer alignment
commit
|
commitdiff
|
tree
2012-06-14
Steph
a
n S
a
alfeld
fixed condi
t
ion ch
e
ck in Align Layers
for regulari
z
ation
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
Merge b
r
anc
h
'm
a
ster' i
n
to regulariz
e
d-affine
commit
|
commitdiff
|
tree
2012-06-08
Ste
p
han
Saalfeld
do not consider disc
o
nnected tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan S
a
alfeld
Merge branch 'regularized-a
f
f
ine
'
of ssh://re
p
o
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
pre-align g
r
aphs and match o
n
ly
overl
a
pping tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
pre-align gra
p
hs and match
on
l
y
o
verlappin
g
tiles
commit
|
commitdiff
|
tree
2012-06-08
S
t
ephan Saal
f
eld
init
i
alize Tile models and not
o
nly p
a
tches
in alig
n
Graphs
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfel
d
chan
g
e
d
a
l
ignGra
p
hs input collections f
r
om Se
t
to
I
terable
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
m
a
ke
su
r
e that static pa
r
ame
t
ers do not override each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalf
e
ld
rem
o
ve spurious import
commit
|
commitdiff
|
tree
2012-06-05
Stephan Sa
a
lfe
l
d
wor
k
around Oracle javac ge
n
erics issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfel
d
m
u
lti-layer-mos
a
i
c use
s
Para
m
/Par
a
mOptimize
.
setup(String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Ste
p
h
an Saalfeld
montage layers uses ParamOptimize
.
se
t
up instead
of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Step
h
a
n
S
a
alfeld
do
n
ot
f
i
x a rand
o
m
ti
l
e if
n
one is fixed
commit
|
commitdiff
|
tree
2012-05-29
Stepha
n
Saalfeld
Conde
n
sed
.
m
a
i
lmap
commit
|
commitdiff
|
tree
2012-05-29
Steph
a
n
Saalfeld
Added
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
S
t
ephan Saa
l
feld
Merge b
r
anch 'master' into re
g
ularized
-
affine
commit
|
commitdiff
|
tree
2012-05-21
Ste
p
han Saalfeld
added *None
*
field to
l
aye
r
ra
n
ge
referenc
e
s
election
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
sp
l
it Align
.
Par
a
mOptimize dialogs in pie
c
es that
fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
added GenericAffineTil
e
2D
commit
|
commitdiff
|
tree
2012-05-21
Steph
a
n Saalfe
l
d
generalized AbstractAffineT
i
le2D generic parame
t
er
commit
|
commitdiff
|
tree
2012-05-15
Step
h
an Saalfeld
t
rack refactoring i
n
mp
i
cbg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan Saalfe
l
d
added regular
i
zed affine
l
a
y
er a
l
ign
m
ent,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Saalfeld
fi
x
ed createImage(): use premul
t
ipl
i
ed raste
r
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n S
a
alfel
d
do not print the
m
ip
m
ap s
c
ale
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
for
now, do not use pre-
m
ultiplied alp
h
a sinc
e
it does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
S
aalfe
l
d
F
i
xed wrong pa
i
n
tin
g
of Pa
t
ches
w
h
en using
a
downsampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stepha
n
Saalfeld
Downsampler
M
i
p
Map
s
now
c
o
n
sistently uses combined
downsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
han Saalfeld
fixed DownsamplerMipMaps bl
e
nding
m
erge
d
alph
a
into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan S
a
a
lfeld
Dow
n
samp
l
er te
s
t
sti
l
l s
h
ows it bein
g
signif
i
cantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Step
h
an Saal
f
e
l
d
Fixed Downsampler
:
range c
h
eck
i
n byte conversion was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Merge
branch 'integral' of ssh
:
//repo
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Step
h
an Saalf
e
l
d
add
e
d
missing packa
g
e to Fakefile
commit
|
commitdiff
|
tree
2012-03-08
S
tephan Saalfe
l
d
Merge branch 'ma
s
ter' of ssh://r
e
p
o
.
or
.
cz
/
srv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-08
Steph
a
n
Sa
a
lfeld
fix local scale estimate
commit
|
commitdiff
|
tree
2012-03-07
S
t
ephan Saalfel
d
ad
d
ed getLocal
S
cale(x,
y
)
me
t
ho
d
to Patch
commit
|
commitdiff
|
tree
2012-03-07
S
t
ephan Saal
f
eld
patch does
not propagat
e
N
onInv
e
rtibleModelExc
e
p
t
ion
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Steph
a
n Saalfeld
Merge br
a
nch 'mast
e
r' of ssh://repo
.
or
.
cz/s
r
v
/git/trakem2
commit
|
commitdiff
|
tree
2012-03-07
St
e
phan
S
aalfe
l
d
a
d
d
e
d methods
to fetch t
h
e closest tria
n
gle
of a tran
s
form
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saalfeld
in the middle of
.
.
.
ame
n
d wi
t
h final commit
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saalfeld
demonstrate by
t
e
conve
r
sion i
n
an
extra lo
o
p to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stepha
n
Saalfel
d
Merge branch
'
integral'
o
f ssh://repo
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Steph
a
n
S
aalfeld
Downsampler fi
n
ished
.
I have
t
ested several
v
a
riants
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Stephan Saalf
e
ld
experim
a
ntal c
o
mmit:
commit
|
commitdiff
|
tree
2012-02-23
Step
h
an Saa
l
feld
Me
r
ge
branch '
i
nte
g
ral
'
of
ssh://
r
epo
.
or
.
c
z
/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
St
e
ph
a
n
Saalfeld
Downsampler with
a
lpha-cha
n
nels rendering into by
t
e
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
S
t
ephan Saalfeld
Merg
e
branc
h
'm
a
ster' of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-02-22
Step
h
an
Saalfeld
se
t
interpolatio
n
mode to actually interpolate ma
s
ks
commit
|
commitdiff
|
tree
2011-10-01
Stephan
S
a
al
f
eld
m
ake IJ
.
log to Utils
.
log in ElasticL
a
y
e
r
Al
i
gnment
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
u
s
e M
o
vingLeastSquaresTrans
f
orm2 in
E
las
t
icLay
e
r
A
lignment
commit
|
commitdiff
|
tree
2011-08-10
Stepha
n
S
a
alfeld
use MovingLe
a
stSquaresTr
a
n
sform
2
in Elast
i
cMontage
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
us
e
Mo
v
i
n
g
L
e
a
stSqua
r
esT
r
ansform2 for warp
i
ng
i
n multi
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
use MovingLeastS
q
u
ar
e
sTransform2 in NonLinearTransformMod
e
commit
|
commitdiff
|
tree
2011-08-10
S
t
ephan Saalfeld
Add
e
d M
o
vingLeastSquaresTransform2 exten
d
i
ng
commit
|
commitdiff
|
tree
2011-08-07
Ste
p
ha
n
Saalfeld
Elas
t
icLayerAlignm
e
nt: When transfer
r
ing layer
t
ransformatio
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
Stephan Saalfeld
flush cache b
e
t
w
e
e
n layer exports (
t
he cache is otherwise
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan Saal
f
eld
free memo
r
y before
run
n
ing mem
o
ry
de
m
andi
n
g
tasks in
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Ste
p
han Saalfeld
fixed bu
g
i
n linearLayerAlignment,
c
alcul
a
te and apply
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
Stephan Saalf
e
ld
flus
h
i
m
a
ge cache memory before d
o
ing a mo
n
tage
commit
|
commitdiff
|
tree
2011-06-29
Stephan S
a
alfeld
El
a
st
i
cM
o
ntag
e
:
commit
|
commitdiff
|
tree
2011-06-29
Stephan Saalfel
d
M
e
rge branc
h
'master' into
e
lastic-align
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalf
e
ld
Mer
g
e br
a
n
c
h 'master'
i
nto
elast
i
c-a
l
ign
commit
|
commitdiff
|
tree
2011-06-28
Stepha
n
Saalfe
l
d
Add
e
d
`
seems-to-wo
r
k' el
a
s
ti
c
montag
i
n
g
.
Missing part
s
a
r
e
commit
|
commitdiff
|
tree
2011-06-28
Stephan
S
aalfeld
*
made
Patch
.
P
atchImage a static cl
a
ss (it
h
a
s
n
o
references
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Stephan Saalfeld
added Pair to Abstrac
t
commit
|
commitdiff
|
tree
2011-06-23
S
t
ephan
S
aalfeld
Align
.
java:
m
o
v
ed twice implement
e
d
Model fitt
i
ng and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Steph
a
n Saalfe
l
d
ElasticAl
i
gn uses the loca
l
si
f
tParam for identifying
commit
|
commitdiff
|
tree
2011-06-23
Stephan
S
aalfeld
Tr
a
nsformMeshMappingWithMask r
o
unds
tria
n
gel
b
o
u
ndin
g
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Ste
p
han S
a
alfeld
attempt to get shar
e
d fu
n
ction for
layer a
l
ignment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stepha
n
S
a
a
lfeld
ti
t
led
m
ontage
d
ialog `Montage' consistently wit
h
the
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan S
a
a
lfeld
Fixed Thread in
t
er
r
u
p
tion in Align
.
co
n
nectT
i
lePairs
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Stephan S
a
al
f
eld
`Mont
a
ge
all
i
m
a
g
es
i
n this layer'
:
commit
|
commitdiff
|
tree
2011-06-17
St
e
ph
a
n Saal
f
el
d
Ela
s
ticAlign fix
e
s:
commit
|
commitdiff
|
tree
2011-06-16
Stephan Saalfeld
M
e
r
ge branch
'
master
'
into elastic-al
i
gn
commit
|
commitdiff
|
tree
2011-06-16
S
t
ephan Saa
l
fe
l
d
commen
t
test rpint
commit
|
commitdiff
|
tree
2011-05-27
S
t
ephan Saalfeld
started
with Elastic
Alig
n
ment,
laye
r
a
l
ignment
already
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
S
tephan Saalfeld
Merge bra
n
ch 'm
a
ste
r
' into mpicbg-model-interface
commit
|
commitdiff
|
tree
2010-11-20
Stephan
S
aalfeld
tracking m
p
icbg mod
e
l-interfac
e
commit
|
commitdiff
|
tree
2010-08-18
Ste
p
han Saalfeld
m
picbg
.
trakem2
.
t
ra
n
sform
.
TransformMesh extrap
o
lates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Steph
a
n Saalfeld
Fixed bug 202
commit
|
commitdiff
|
tree
2010-08-16
Step
h
an
Saalfeld
* add minimal absolut
e
n
u
mber of inliers as a para
m
eter
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Merge bra
n
ch 'mast
e
r' into
reje
c
tconsta
n
tback
g
round
commit
|
commitdiff
|
tree
2010-08-16
Step
h
an Saalfel
d
Me
r
ge
b
ranch
'
m
aster' of ssh
:
//repo
.
or
.
cz/srv/git/tr
a
kem2
commit
|
commitdiff
|
tree
2010-08-07
Step
h
a
n Saalfeld
M
erge
b
ranc
h
'rejectconsta
n
tbackgroun
d
'
of ssh:
/
/repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
S
t
ephan Saalfe
l
d
f
i
nding connected tiles moved into bas
e
class
commit
|
commitdiff
|
tree
2010-08-07
St
e
phan Saal
f
eld
u
s
e outlier fil
t
e
r in optimizer
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfeld
findin
g
connected tiles moved into base
c
l
ass
commit
|
commitdiff
|
tree
2010-08-06
Stephan Saalfel
d
Merge
b
ranch 'r
e
j
e
ctconstantback
g
rou
n
d'
of ssh://repo
.
.
.
commit
|
commitdiff
|
tree
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