repo.or.cz
/
trakem2.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
added RobustNormalizedLocalContrastFilter, fast and multi-threaded
2014-10-04
St
e
phan Saal
f
eld
ad
d
ed RobustNor
m
alizedLoc
a
lContrastF
i
l
t
er, fast
a
n
d
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfeld
Cha
n
ged default
block
r
a
dius in
N
or
m
alizeLocalContrast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saa
l
feld
auto-removed some training white
s
pac
e
s
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
added run method that does not n
e
e
d
a worke
r
fo
r
easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
han
Saalfeld
a
uto-removed some
t
r
a
iling whitespaces
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
han Saalfeld
p
aral
l
e
l
iz
e
d in
t
ersection t
e
sts for pai
r
OverlappingTil
e
s
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfel
d
auto-finalize constant properties
and parameters i
n
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
S
t
ephan Saal
f
eld
t
hre
a
dsafe Utils
.
ensur
e
(File)
commit
|
commitdiff
|
tree
2014-06-06
S
t
ephan Saalf
e
ld
fixe
d
bug in
generation of alphama
s
ks
commit
|
commitdiff
|
tree
2014-06-05
S
teph
a
n Saal
f
eld
e
x
ternalized Disto
r
tionCorrect
i
on
.
r
u
n
to e
n
able cal
l
ing
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan
S
aalfeld
Ecli
p
se autu-
c
o
s
metics in DistortionCorrection
commit
|
commitdiff
|
tree
2014-05-19
St
e
ph
a
n Saal
f
eld
Merge
branch 'master' i
n
to
i
ntensity-trans
f
orm
commit
|
commitdiff
|
tree
2014-05-19
Stephan
S
aalfel
d
use standard
writer for coordinatetransf
o
rms
commit
|
commitdiff
|
tree
2014-05-19
Step
h
a
n
Saalfeld
depe
n
d o
n
javax
.
m
edia for jai
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfel
d
a
dded methods for
d
owns
a
mpling more tha
n
one level
commit
|
commitdiff
|
tree
2013-10-10
Ste
p
han
S
aalfel
d
replaced plugins
.
con
f
ig with
the Fiji v
e
rsion
commit
|
commitdiff
|
tree
2013-09-20
S
t
ephan Saal
f
eld
Merge
bran
c
h 'master'
of ssh://repo
.
or
.
cz/srv/git/t
r
a
k
em2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
Merge branch 'ma
s
te
r
' of ssh:/
/
re
p
o
.
or
.
cz/srv/g
i
t/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
Par
a
llel pa
i
r
O
v
e
rlapp
i
n
gTiles did
n
ot work and repor
t
ed
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saal
f
eld
Merge branch 'master'
o
f ssh://
r
epo
.
or
.
cz
/
srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
re-
a
dded lega
c
y optimizer for spring m
e
shes, thi
s
w
o
uld
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stepha
n
Saalfel
d
T2-NIT/pom
.
xml c
a
n
i
nherit v
e
rsio
n
n
umber from parent
commit
|
commitdiff
|
tree
2013-08-14
St
e
phan Saal
f
el
d
added missing depend
e
nc
i
e
s to java3d core-utils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Step
h
an
S
a
alfe
l
d
set p
a
r
ent pom
o
f
pom-trakem2 to pom
-
f
i
ji
.
2
.
0
.
0-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
St
e
phan
S
aalfeld
M
er
g
e branch '
s
pring-mes
h
2
'
of s
s
h://rep
o
.
o
r
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Steph
a
n Saalfe
l
d
Merge
branch '
m
aster' into
spr
i
ng
-
mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
r
ai
s
ed mpicbg dependency version to 0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
a
a
lfeld
rais
e
d
d
ependency
t
o
S
i
mple_Neurite_Trac
e
r
t
o 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
S
t
ep
h
an
Saalfeld
Merge branch
'
maste
r
'
i
n
to
spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
S
tephan
S
aalfeld
a
d
ded comments and auto-finali
z
e in DistortionCorrection/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saa
l
fel
d
added mpicbg
.
ver
s
io
n
as maven property
,
commit
|
commitdiff
|
tree
2013-05-06
St
e
phan Saal
f
eld
trac
k
move of the
imglib1
dependency
commit
|
commitdiff
|
tree
2013-04-22
S
tephan Saalfeld
Me
r
g
e
b
r
anc
h
'm
a
ster
'
int
o
spring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Step
h
an Saalfeld
M
erge br
a
nch 'master' into s
p
ring-m
e
sh2
commit
|
commitdiff
|
tree
2013-01-18
Stephan Sa
a
lfeld
u
se arraylist whe
r
e
ar
r
aylists are ret
u
rned
commit
|
commitdiff
|
tree
2013-01-16
Ste
p
han Sa
a
lfeld
adj
u
s
t
mpicbg spring
-
m
es
h
2
w
h
ich needs l
e
ss
damping
commit
|
commitdiff
|
tree
2013-01-11
S
t
ephan Sa
a
lf
e
ld
Fixed
b
ug in Patch
.
getFullC
o
ordinateT
r
a
nsf
o
rm that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Chan
g
ed fixedPatches/Ti
l
e
s i
n
put collection to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
S
tephan Saalfeld
Pair c
o
nst
r
uct
o
r has to be public
commit
|
commitdiff
|
tree
2013-01-10
Stephan
S
aalfeld
forgot to set
i
sAligned flag in elastic laye
r
alignm
e
n
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
S
t
ephan S
a
a
l
feld
elastic montage param must b
e
public
commit
|
commitdiff
|
tree
2013-01-07
Stepha
n
Saalf
e
ld
added
Patch
.
ge
t
FullCordinateTransform() wh
i
c
h
genera
t
es a
commit
|
commitdiff
|
tree
2013-01-07
S
t
eph
a
n
Saal
f
eld
* re
m
o
v
ed isA
l
igned fro
m
Abstract Param class
commit
|
commitdiff
|
tree
2013-01-05
Stephan
S
a
alfeld
877: it is le
g
al fo
r
l
a
yerThing
to b
e
null
commit
|
commitdiff
|
tree
2012-12-21
Step
h
an Saalfeld
Corr
e
cte
d
several
long-standing is
s
ues
w
ith SIFT
-
lin
e
a
r
and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saal
f
eld
R
e
g
u
lari
z
e
dLayerAlignment
g
o
t
more flexibl
e
AP
I
methods a
n
d
commit
|
commitdiff
|
tree
2012-12-19
S
tephan Saalfeld
cl
e
ari
n
g ca
c
he in la
y
er alignment must be
d
efault true
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfel
d
prin
t
optimize
r
results a
n
d
d
o not
print "ma
t
ching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saa
l
feld
d
o
not rem
o
ve em
p
ty layers in layer alignment
commit
|
commitdiff
|
tree
2012-11-07
St
e
phan Saalfeld
fixed version number o
f
mpicb
g
depe
n
d
e
ncy
commit
|
commitdiff
|
tree
2012-11-07
Step
h
a
n Saalfeld
fixe
d
merg
e
error: move
d
RobustNo
r
ma
l
izeLocalCont
r
ast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
S
t
ep
h
an
Saalfeld
m
ulti-th
r
eaded Robu
s
t
NormalizeLocalContrast m
a
in
body
commit
|
commitdiff
|
tree
2012-09-01
Steph
a
n Saalfeld
Removed
Disp
l
ayCanvas
.
setDrawingColor(int,int,boole
a
n
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saa
l
feld
Merge branch 'master' of ssh://
r
ep
o
.
o
r
.
cz/
s
rv/git/
t
r
a
kem
2
commit
|
commitdiff
|
tree
2012-08-31
S
t
ephan
Saalfeld
added experimental local contrast enhancer RobustNormaliz
e
Lo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan Saalfel
d
r
e
m
o
v
ed obsolete choice from align layers dialog
commit
|
commitdiff
|
tree
2012-06-26
S
tephan S
a
alfeld
spl
i
t
e
lastic montage dial
o
g for bl
o
ck matching
a
nd use
commit
|
commitdiff
|
tree
2012-06-26
St
e
phan Saalfeld
Merge bra
n
ch
'
maste
r
' of ssh
:
//repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-26
St
e
phan
Saalfeld
use
and do not ignore al
p
h
a in helper met
h
od
commit
|
commitdiff
|
tree
2012-06-21
Stephan Sa
a
l
f
e
l
d
use th
e
new sequentia
l
dialo
g
s
in "mo
n
tage
"
for a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan
S
aalfeld
Merge
b
ranch
'
master' of ssh://repo
.
or
.
cz/srv
/
git/trakem2
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saa
l
feld
fixed range check
in
l
ayer al
i
gnment
commit
|
commitdiff
|
tree
2012-06-14
Step
h
a
n
Saal
f
eld
fix
e
d
c
o
ndition check in
Align Laye
r
s
f
o
r
regularizati
o
n
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan
Saalfe
l
d
Merge bran
c
h 'master' into regular
i
zed-af
f
i
ne
commit
|
commitdiff
|
tree
2012-06-08
S
tephan Saalfeld
do not consider disconnected
tiles
commit
|
commitdiff
|
tree
2012-06-08
S
tephan Saalfeld
Merg
e
b
r
a
n
ch 'regula
r
ized-affine' of ssh
:
//repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an Saalfel
d
pre-align graphs and mat
c
h only overlapping ti
l
es
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saal
f
eld
pre-align graphs and m
a
t
c
h on
l
y o
v
erlapping t
i
les
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalf
e
ld
i
n
it
i
alize Tile models and not only
patches in
alignGr
a
p
hs
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saa
l
feld
changed alignGra
p
hs
i
n
p
ut colle
c
tions
from Set to Iter
a
b
le
commit
|
commitdiff
|
tree
2012-06-08
S
tephan Saa
l
feld
make sure that static paramete
r
s do
not overr
i
de
e
ach
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan
S
aal
f
eld
remov
e
spur
i
ous
i
mport
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfel
d
wo
r
k
a
roun
d
Oracle
j
avac ge
n
erics iss
u
e
commit
|
commitdiff
|
tree
2012-06-05
Stephan Sa
a
l
fel
d
multi
-
layer
-
mosaic uses Param
/
ParamOp
t
imize
.
s
etup
(
String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
montage la
y
ers uses ParamOpt
i
mize
.
s
etup instead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stepha
n
Saalfeld
do n
o
t fix a random tile
i
f none is
f
ixed
commit
|
commitdiff
|
tree
2012-05-29
S
tephan Saalfel
d
Condensed
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
St
e
phan Saalfeld
Added
.
mail
m
ap
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
Merge branch '
m
aster' i
n
to regu
l
arized-affine
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
added *None* field to layer range refe
r
ence select
i
o
n
commit
|
commitdiff
|
tree
2012-05-21
Step
h
a
n S
a
al
f
eld
spli
t
Align
.
ParamOpt
i
mi
z
e dialogs i
n
pi
e
ces that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
S
tepha
n
Sa
a
l
f
eld
added Generic
A
ffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
S
t
e
p
han Sa
a
lfeld
generali
z
e
d Abstrac
t
AffineTile2D gene
r
ic parameter
commit
|
commitdiff
|
tree
2012-05-15
S
t
ephan Saalfeld
trac
k
refactori
n
g
in
m
picbg
.
commit
|
commitdiff
|
tree
2012-05-09
Stepha
n
Saalfe
l
d
added regul
a
r
ized a
f
fine
l
ay
e
r
alignment
,
commit
|
commitdiff
|
tree
2012-03-28
S
t
ephan Sa
a
lfeld
fixed createImage():
use premultiplied r
a
ster
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n
Saal
f
el
d
d
o
not print th
e
mipmap scal
e
commit
|
commitdiff
|
tree
2012-03-27
S
tephan S
a
alfeld
for no
w
, do not
u
se
p
r
e-multipli
e
d
a
lp
h
a sinc
e
i
t does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
S
aa
l
feld
F
i
xe
d
wrong p
a
inti
n
g
of Patches when using a downsampl
e
r
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
e
ph
a
n S
a
a
l
f
eld
D
o
wnsamplerMipMaps n
o
w
consiste
n
tly us
e
s combined downsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
h
a
n Saalfel
d
fixed Dow
n
samplerMipMaps blending mer
g
ed a
l
ph
a
into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n Saalfeld
Do
w
nsampler te
s
t
s
till shows it b
e
i
n
g sig
n
ificantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
S
aal
f
eld
Fixed
D
ownsample
r
: range c
h
eck in byte conversi
o
n
was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
M
e
rg
e
branch 'i
n
tegral' of ssh://repo
.
or
.
cz
/
srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
S
t
ephan Saalfeld
added miss
i
ng packa
g
e t
o
F
akefile
commit
|
commitdiff
|
tree
2012-03-08
Step
h
an
S
aalfeld
Me
r
ge branch 'mast
e
r' of
ss
h
:
/
/
r
epo
.
or
.
cz/srv/g
i
t/t
r
akem2
commit
|
commitdiff
|
tree
2012-03-08
Stephan Sa
a
lfeld
fix local
s
c
a
le estima
t
e
commit
|
commitdiff
|
tree
2012-03-07
S
t
e
phan S
a
a
lf
e
ld
a
dded ge
t
Loca
l
Sc
a
le(x,y
)
method to Patch
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
patch does
n
ot pro
p
a
gat
e
NonInver
t
ibleModelException
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
Merge bran
c
h 'm
a
s
ter' of
s
s
h:
/
/rep
o
.
o
r
.
cz/srv/git/trake
m
2
commit
|
commitdiff
|
tree
next