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make sure that static parameters do not override each other
2012-06-08
Stephan Saalfel
d
ma
k
e
sure t
h
at
s
tatic pa
r
ameters do not overri
d
e each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
St
e
phan
S
aalf
e
ld
r
e
mov
e
spurious imp
o
rt
commit
|
commitdiff
|
tree
2012-06-05
S
te
p
ha
n
Sa
a
lfe
l
d
workar
o
und
O
racle j
a
va
c
generics issue
commit
|
commitdiff
|
tree
2012-06-05
St
e
phan Saa
l
feld
multi-layer-mosaic us
e
s Param/Pa
r
amOptimiz
e
.
setup(
S
tring
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
t
ephan Saalfeld
m
ontage layers uses P
a
r
a
mOp
t
imize
.
setup i
n
s
t
ead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
do not fix a ran
d
o
m t
i
le
i
f no
n
e is fixe
d
commit
|
commitdiff
|
tree
2012-05-29
Ste
p
han Saalfe
l
d
Conde
n
sed
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
St
e
phan Saa
l
feld
Added
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
St
e
phan Saalfeld
Merge branch 'master' into regularized-affine
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
adde
d
*None*
f
ield
t
o layer range reference
s
election
commit
|
commitdiff
|
tree
2012-05-21
S
t
ephan Saa
l
feld
split
A
l
i
gn
.
ParamOptimiz
e
dialo
g
s
in pi
e
ces that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
S
t
e
phan Saalfe
l
d
added GenericAffine
T
i
le2D
commit
|
commitdiff
|
tree
2012-05-21
Stepha
n
Saalfeld
gene
r
a
lize
d
A
b
stractAffineTile2D generic
p
a
r
ame
t
er
commit
|
commitdiff
|
tree
2012-05-15
S
t
e
phan
S
aalfeld
track refac
t
ori
n
g
i
n
mp
i
cbg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan
S
a
a
l
f
eld
added regularize
d
a
f
fine layer alignment,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Saalfel
d
fixed c
r
eateImage(
)
: use
p
remul
t
ipl
i
ed raste
r
commit
|
commitdiff
|
tree
2012-03-27
S
tephan Saalfeld
d
o
not
p
rin
t
th
e
mipmap s
c
ale
commit
|
commitdiff
|
tree
2012-03-27
Stephan
S
a
al
f
eld
for
n
ow,
d
o not use pre-multiplied alpha
s
ince i
t
does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
phan S
a
a
l
feld
Fixed wrong pa
i
nting of Patches w
h
en using a downsampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stepha
n
Saa
l
feld
D
ownsamplerMipMaps now
consistently uses comb
i
ned downsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
p
h
an Saalf
e
ld
fixed
DownsamplerM
i
pMap
s
blending merged alpha into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Step
h
an Saalf
e
ld
Downsa
m
pler test still sho
w
s it being
s
ignificantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stepha
n
Sa
a
lfeld
Fix
e
d D
o
wnsam
p
ler: range
c
heck in byte convers
i
on was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
teph
a
n Saalf
e
ld
Merge
b
ranch
'
integral' of ssh://repo
.
or
.
cz/srv/
g
it
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
S
t
epha
n
Saalfe
l
d
add
e
d missin
g
packa
g
e to Fakefile
commit
|
commitdiff
|
tree
2012-03-08
S
tephan Saa
l
feld
M
e
r
ge branch 'master' of ssh:
/
/re
p
o
.
o
r
.
cz/
s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalfeld
fix
l
ocal scale est
i
m
ate
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
adde
d
getL
o
calScale(x
,
y) method to Pat
c
h
commit
|
commitdiff
|
tree
2012-03-07
Steph
a
n Saalfel
d
patch does no
t
pr
o
pagate
NonInver
t
ibleMod
e
lEx
c
eption
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
S
t
eph
a
n Saalfeld
Merge
branch
'
master
'
of ssh:/
/
repo
.
or
.
c
z
/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-07
S
tephan Saalf
e
ld
added met
h
o
d
s
to
f
etch the closes
t
triangle of a tran
s
f
orm
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Stephan
S
aalfeld
in the middle of
.
.
.
a
mend with final commit
commit
|
commitdiff
|
tree
2012-02-27
Step
h
an Sa
a
lfe
l
d
demonstrate
byte
conversion in an e
x
tra loop to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stepha
n
Saalfeld
M
e
rge
b
ranc
h
'integral'
of
s
sh://re
p
o
.
or
.
cz/srv/
g
it
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan
Saalfeld
Downsam
p
ler finished
.
I
h
a
ve
test
e
d sev
e
ral variants
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
S
teph
a
n
Sa
a
lfeld
exper
i
mantal
commit
:
commit
|
commitdiff
|
tree
2012-02-23
Stephan Saalfeld
M
erge
bra
n
c
h 'int
e
gr
a
l' of
s
sh://repo
.
o
r
.
cz/srv/gi
t
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
Stepha
n
Saalfe
l
d
D
ownsa
m
ple
r
w
i
th alpha-channels rend
e
ring into
b
yte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
S
t
ephan Saalfeld
Me
r
ge bran
c
h 'ma
s
te
r
' o
f
ssh:/
/
repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-02-22
Stephan
S
aalfel
d
set interpolation mode to ac
t
u
a
lly interpolate masks
commit
|
commitdiff
|
tree
2012-01-06
Step
h
an Saalfeld
Fixed
b
ug 392,
the property n_mipmaps_thr
e
ads must
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Ste
p
han
Saa
l
feld
Elastic
M
ontag
e
: d
o
not v
i
sualize
commit
|
commitdiff
|
tree
2011-11-07
S
t
ephan Saalfeld
Mer
g
e bra
n
c
h
'
m
a
ster' of s
s
h://repo
.
or
.
cz/srv/g
i
t/trakem2
commit
|
commitdiff
|
tree
2011-11-07
S
tephan
Saalfeld
AlignT
a
sk: really
s
k
ip layers annotation-with lin
k
ed
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Ste
p
han
S
aa
l
f
e
ld
ElasticMo
n
tag
e
:
r
espect fixe
d
Patc
h
es (fr
o
m
select
i
on
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfeld
ren
a
m
e
d shading l
o
c
a
l paramet
e
r
commit
|
commitdiff
|
tree
2011-11-07
Stephan
Saalfeld
Atte
m
p
t to f
i
x bu
g
380
.
Plea
s
e check if the be
h
avior
commit
|
commitdiff
|
tree
2011-11-07
Step
h
an
S
a
alfeld
added
comments and fixed t
y
po
commit
|
commitdiff
|
tree
2011-10-22
St
e
phan Saa
l
f
el
d
ElasticAlignment/Mo
n
tage:
commit
|
commitdiff
|
tree
2011-10-19
Stephan S
a
alfeld
Merge branch
'master'
o
f ssh://repo
.
or
.
cz/
s
rv
/
git/trakem2
commit
|
commitdiff
|
tree
2011-10-12
Steph
a
n S
a
alfeld
M
erge
branch 'master
'
of ss
h
://repo
.
or
.
cz/srv/
g
it/trake
m
2
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalfeld
Mer
g
e
b
r
an
c
h 'master' of ssh
:
//repo
.
or
.
cz/srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saa
l
feld
A
l
i
gn uses Utils
.
l
o
g in
s
te
a
d
o
f
I
J
.
log
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalfeld
Distortion correction uses Utils
.
log instead o
f
IJ
.
log
commit
|
commitdiff
|
tree
2011-10-10
S
teph
a
n Saal
f
eld
log
t
ime and date pear
each
log
prin
t
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalf
e
ld
ad
d
ed experimental 16bit unsigned t
i
les exporter
commit
|
commitdiff
|
tree
2011-10-10
S
t
ephan Saalfeld
Transfo
r
mMeshMappingWithMa
s
k
s got methods and renderi
n
g
commit
|
commitdiff
|
tree
2011-10-01
S
t
ephan
S
aalfeld
make IJ
.
l
o
g
to Utils
.
log in ElasticL
a
yerAlignme
n
t
commit
|
commitdiff
|
tree
2011-09-29
S
tephan S
a
alfeld
added block
r
adi
u
s as parameter
t
o
commit
|
commitdiff
|
tree
2011-09-28
Ste
p
han Saalfel
d
ElasticLayerAl
i
gnment visuali
z
at
i
on back to fal
s
e
commit
|
commitdiff
|
tree
2011-09-27
Stephan Saalfeld
s
p
ringmesh
d
am
p
bac
k
to nor
m
al,
n
ot much
commit
|
commitdiff
|
tree
2011-09-27
St
e
p
h
an Saa
l
fel
d
M
erg
e
br
a
nch 'maste
r
' of ssh
:
//repo
.
or
.
cz
/
srv/gi
t
/t
r
akem2
commit
|
commitdiff
|
tree
2011-09-27
Stephan Saalfeld
added
local
s
moothness filter to el
a
stic
l
a
yer
commit
|
commitdiff
|
tree
2011-09-27
S
t
ephan Saalfeld
added a
m
ethod to create
a
n AbstractMode
l
using an
commit
|
commitdiff
|
tree
2011-09-25
Ste
p
h
a
n
S
aalfeld
fixed
w
ron
g
namings fro
m
las
t
commit
commit
|
commitdiff
|
tree
2011-09-24
Stephan Saalfeld
a
d
ded tran
s
fer modes
f
or Co
o
rdinat
e
Transf
o
rm
s
,
commit
|
commitdiff
|
tree
2011-09-24
Stephan Saalfeld
added a metho
d
to pre-append
a
Coordina
t
e
Transform
commit
|
commitdiff
|
tree
2011-09-15
Stephan Saalfeld
remove clutter
commit
|
commitdiff
|
tree
2011-09-15
Stephan Sa
a
lfeld
Merge bra
n
c
h
'master'
i
nto elastic-al
i
gn
commit
|
commitdiff
|
tree
2011-09-15
Stephan Saalfeld
small declutter
NonLinearTrans
f
ormMode
commit
|
commitdiff
|
tree
2011-09-14
Stephan
Saalfeld
M
e
rge branch
'elastic-align' of ssh://repo
.
or
.
c
z/srv
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Stephan Saalfeld
Tr
a
n
s
formMeshMappingWit
h
Masks mu
l
ti
-
t
hreaded
commit
|
commitdiff
|
tree
2011-09-14
S
t
ephan Saalfe
l
d
m
ake
mesh resolut
i
on a Pat
c
h pa
r
ameter
i
nstead
o
f 32
commit
|
commitdiff
|
tree
2011-09-12
Stephan
S
a
a
lfeld
M
e
rge br
a
nch '
m
as
t
er' into ela
s
t
ic-al
i
gn
commit
|
commitdiff
|
tree
2011-09-12
S
t
ephan Saalf
e
ld
M
erge b
r
a
nch 'elast
i
c-al
i
gn' o
f
s
sh://repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2011-09-12
St
e
phan Saalfeld
separate SIFT p
a
r
amete
r
dialog
commit
|
commitdiff
|
tree
2011-09-06
Ste
p
han Saalfeld
fixed Elastic Montage us
i
ng
the wr
o
ng linear model
.
.
.
commit
|
commitdiff
|
tree
2011-09-01
St
e
p
han Saalfeld
fixed Downsampler
d
o
i
ng one pix
e
l less than it sho
u
ld
commit
|
commitdiff
|
tree
2011-08-30
Stephan Saa
l
feld
Ela
s
tic
M
o
ntage: switch o
f
f visualization ag
a
in
commit
|
commitdiff
|
tree
2011-08-30
Stephan Saalfeld
fix Gaussian mipmap
g
eneration in FS
L
oader:
commit
|
commitdiff
|
tree
2011-08-30
Stephan Saalfeld
Fl
o
atProcesssorT2
got a method
for dow
n
sampling
by
.
.
.
commit
|
commitdiff
|
tree
2011-08-29
S
tephan Saalfeld
up
d
at
e
d serial ui
d
commit
|
commitdiff
|
tree
2011-08-29
Stephan Saalfeld
a
d
de
d
an 1/2 downs
a
m
p
ler
f
o
r
al
l
ImagePro
c
essor
t
ypes
.
.
.
commit
|
commitdiff
|
tree
2011-08-29
Step
h
an Saalfe
l
d
ElasticM
o
nta
g
e
:
commit
|
commitdiff
|
tree
2011-08-29
Stephan
S
aalfeld
fix
copy/paste
b
u
g
in ElasticMontage that made ima
g
e2
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
Stephan Saalf
e
l
d
ElasticLayerAlignment: ap
p
ly a copy of the layer transf
o
rm
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
Step
h
an S
a
alfeld
Overri
d
e applyInPlace
m
ethod in MLST
and MLST2, synchronizin
.
.
.
commit
|
commitdiff
|
tree
2011-08-23
Stephan
S
aalfeld
ElasticLayerAl
i
gnment:
a
ppl
y
t
ransfor
m
ations using
.
.
.
commit
|
commitdiff
|
tree
2011-08-22
Steph
a
n Sa
a
l
feld
F
i
x
e
d inac
c
ura
t
e rendering of fl
a
t images w
i
th q
u
ality
.
.
.
commit
|
commitdiff
|
tree
2011-08-22
Stephan Saalfeld
ElasticMont
a
ge: do
n
ot visualize (can be
h
armf
u
l whe
n
.
.
.
commit
|
commitdiff
|
tree
2011-08-20
S
t
ephan Saalfel
d
P
a
tched patch pain
t
ing
such th
a
t it
conforms
t
o the
.
.
.
Signed-off-by:
Stephan Saalfeld
<saalfeld@mpi-cbg.de>
commit
|
commitdiff
|
tree
2011-08-10
Step
h
a
n
Saalfeld
use Mov
i
ngLeastSquaresTransform2 in Elasti
c
Layer
A
lignm
e
nt
commit
|
commitdiff
|
tree
2011-08-10
S
t
e
p
han S
a
al
f
e
ld
u
s
e MovingLeastSq
u
ar
e
s
Transform2 in ElasticMo
n
tage
commit
|
commitdiff
|
tree
2011-08-10
Stephan S
a
a
l
fel
d
use MovingLe
a
stSquare
s
Trans
f
orm2 for warping in multi
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
use MovingLe
a
stSquaresTransform2 in NonLinea
r
Trans
f
o
r
mMode
commit
|
commitdiff
|
tree
2011-08-10
Ste
p
han
Saalfeld
Added
M
ov
i
n
g
Le
a
stSquaresTr
a
nsform2 ext
e
nding
commit
|
commitdiff
|
tree
2011-08-07
Steph
a
n Saalfeld
ElasticLayer
A
lignment: When tra
n
sferr
i
ng
laye
r
transformatio
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
St
e
phan Saalfeld
flush cache be
t
wee
n
la
y
er expo
r
t
s
(the
cac
h
e is otherwise
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Step
h
an Saal
f
eld
free memory before ru
n
ning memory deman
d
i
n
g t
a
sks in
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan
S
aal
f
eld
fixed
bug in
l
i
near
L
a
y
e
r
Alignment, calculat
e
and apply
.
.
.
commit
|
commitdiff
|
tree
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