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Merge branch 'master' of ssh://repo.or.cz/srv/git/trakem2
2009-10-07
S
t
ephan
S
aalfeld
Me
r
ge
b
r
a
n
c
h
'master' of ssh://repo
.
or
.
c
z
/srv/gi
t
/trakem2
commit
|
commitdiff
|
tree
2009-10-07
Ste
p
han Saa
l
feld
Fix
0
.
5gr
e
y back
g
round for By
t
eProcessors in
commit
|
commitdiff
|
tree
2009-09-24
St
e
phan Saalfeld
Me
r
ge b
r
a
nch 'ma
s
ter' of ssh
:
//
r
ep
o
.
or
.
cz/srv/
g
it/tr
a
kem2
commit
|
commitdiff
|
tree
2009-09-23
Stephan
Saal
f
eld
Sa
v
in
g
a l
o
t of RAM in visualiz
i
ng
t
h
e
l
ens d
i
stortion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saa
l
fe
l
d
Merg
e
branch 'stack' i
n
t
o
align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Sa
a
lfeld
Hopefully fixed th
e
scaling in Stack
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfel
d
Merge bran
c
h
'stack' into align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfel
d
M
e
rg
e
bra
n
ch 'stack' of s
s
h://repo
.
or
.
cz/srv/gi
t
/tra
k
e
m
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
St
e
phan Saalfeld
Me
r
ge
b
r
anch
'
sta
c
k'
i
nto ali
g
n
commit
|
commitdiff
|
tree
2009-09-17
St
e
ph
a
n Saalf
e
ld
s
e
para
t
e
d
t
h
e actual alignLayersLinearly job from the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
han Saalfeld
Lo
a
der uses db_lock
commit
|
commitdiff
|
tree
2009-09-16
S
t
ephan Saalfeld
Merge b
r
anch '
a
lign' of ssh://repo
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
Ste
p
h
a
n Saalfeld
Fi
x
ed a bu
g
t
hat prevented
th
e
multi-layer mosai
c
k
ing
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan
S
aalfeld
M
e
rge branch 'sta
c
k' o
f
ssh://repo
.
o
r
.
c
z/srv/g
i
t/trakem
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan
Saalfe
l
d
a
very intermedia
t
e com
m
it
t
hat i
n
terrupts me at starting the
commit
|
commitdiff
|
tree
2009-09-11
Ste
p
han Saalfeld
decachi
n
g was not succes
s
ful---truing anoth
e
r on
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-11
Stephan S
a
alfe
l
d
Decache processed patche
s
a
f
te
r
application of
t
he CT
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
Merge
branch '
a
lign' of ssh:
/
/
r
epo
.
or
.
cz
/
srv/gi
t
/t
r
akem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
S
t
ephan Saalfeld
Added
a de
f
orm option t
o
t
h
e mult
i
-la
y
er-m
o
sai
c
method
.
commit
|
commitdiff
|
tree
2009-09-10
Step
h
an
Saalfe
l
d
Added a
d
eform option
to
t
he multi-layer
-
mos
a
ic method
.
commit
|
commitdiff
|
tree
2009-09-10
Stepha
n
Saalfeld
A
dded
a
co
n
v
e
nience method to export a flat image for
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Step
h
an Saalfel
d
Cosmet
i
cs (remo
v
ed som
e
non-req
u
ired i
m
ports and empty
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Ste
p
h
a
n
Saalfeld
A a stat
i
c metho
d
t
o ge
t
the bounding box
o
f a
collection of
commit
|
commitdiff
|
tree
2009-09-02
Stepha
n
Saalfeld
* Fixed wrong
blu
r
ring
commit
|
commitdiff
|
tree
2009-09-01
Ste
p
han Saalfeld
ictScale was inverse---anyway---there
are remaining
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
S
t
ephan Saalfe
l
d
Ps
e
udo-f
i
x f
o
r locking issues
commit
|
commitdiff
|
tree
2009-09-01
St
e
p
han Saalfeld
Cr
e
ated the following
ARGB c
o
mposite modes
f
or two
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Stephan Saalfeld
Remo
v
ed the
bro
k
en AddRGBComposite
and added a functional
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saalfeld
first
a
ttempt
t
o
create
an
a
ddi
n
g Comp
o
siteContext
commit
|
commitdiff
|
tree
2009-08-31
Stephan Sa
a
lfeld
a
d
ded ta
b
for stack z-dis
p
l
a
yable
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saalfel
d
Stack assu
r
es the correct
s
moothing for th
e
sc
a
le introduced
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
S
t
e
phan Saal
f
eld
A
f
fin
e
TransformMode notifies all aff
e
cted Dis
p
layables
.
.
.
commit
|
commitdiff
|
tree
2009-08-31
Stephan Saalfeld
* Fixed bounding box estima
t
ion
commit
|
commitdiff
|
tree
2009-08-30
St
e
phan Saa
l
f
e
l
d
* removed
n
on-required m
e
t
h
ods from patch
commit
|
commitdiff
|
tree
2009-08-30
Steph
a
n Saalfeld
consistently imple
m
ented invertibl
e
coordinatetra
n
sforms
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saalfeld
A
dded
I
nvertibleCoordina
t
e
Trans
f
ormList
commit
|
commitdiff
|
tree
2009-08-30
Stephan Saal
f
eld
InvertibleCoo
r
d
inat
e
Transform impleme
n
ts
CoordinateTransfor
m
.
.
.
commit
|
commitdiff
|
tree
2009-08-30
Ste
p
h
a
n Saa
l
f
eld
pr
o
per type CoordinateTransformList
.
clone()
commit
|
commitdiff
|
tree
2009-08-06
S
t
ephan
Saal
f
eld
Fix Bug 71
commit
|
commitdiff
|
tree
2009-07-06
St
e
p
h
an Saalfeld
Merge branch
'
master' of ssh://saalf
e
ld@repo
.
o
r
.
cz
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
Stephan Saalfeld
Merge branch 'master
'
int
o
iteratin
g
-lenscor
r
e
ction
commit
|
commitdiff
|
tree
2009-07-06
Ste
p
ha
n
Sa
a
lfeld
Fixed the iteration in lens
-
correc
t
ion
such that the
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
Stephan Saalfeld
I
mplemete
d
itera
t
ing lens-
c
orrec
t
i
o
n
a
s
d
escr
i
bed in
.
.
.
commit
|
commitdiff
|
tree
2009-07-06
Stephan
S
aalfeld
TransformMeshMapping sets Inte
r
polat
i
o
nMethod
(
trac
k
ing
.
.
.
commit
|
commitdiff
|
tree
2009-06-29
Stephan Saalfeld
Merge b
r
an
c
h 'paintables'
commit
|
commitdiff
|
tree
2009-06-29
Stephan Saalf
e
ld
Distorti
o
nCorr
e
ctionTas
k
fin
a
lly does the all t
o
all
commit
|
commitdiff
|
tree
2009-06-29
S
tephan
Saal
f
e
l
d
AbstractAff
i
neTile2D
can i
d
entify
t
h
e common PointMatches
.
.
.
commit
|
commitdiff
|
tree
2009-06-29
Stephan Saalfeld
Fixed transfo
r
m
meshm
a
pping
.
js
tes
t
to conform
with
.
.
.
commit
|
commitdiff
|
tree
2009-06-26
Stephan Sa
a
lfeld
A not so impor
t
a
n
t
i
m
p
r
o
v
ement of how poin
t
cor
r
espon
d
ences
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan
S
a
alfeld
Fix
e
d a
c
cide
n
tially inverted
affine c
o
nc
a
tenation
.
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
St
e
phan Saalfeld
Merge bra
n
ch 'p
a
intables'
of
s
sh://saalfe
l
d@r
e
po
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Steph
a
n Saalfeld
Ap
p
ly in NonL
i
nearT
r
a
nsformMode wo
r
k
s
.
It was tested
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan Saalfeld
Fixed XML parsing of Coord
i
n
at
e
TransformLists
.
They
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan Saalf
e
ld
Added TrakEM2 extensio
n
of AffineM
o
d
e
l2D
commit
|
commitdiff
|
tree
2009-06-25
Stephan S
a
alf
e
ld
Fixed several b
u
gs in and extended MovingLea
s
tSq
u
ar
e
sTransform:
commit
|
commitdiff
|
tree
2009-06-25
Step
h
an Saal
f
eld
Patch ca
l
culates the
me
m
ory to f
r
e
e for
rendering a
.
.
.
commit
|
commitdiff
|
tree
2009-06-25
Stephan S
a
alfeld
Coo
r
dinateTrans
f
o
r
mLi
s
t
has
a
g
e
neric parame
t
er t
h
at
.
.
.
commit
|
commitdiff
|
tree
2009-06-22
Stephan Saal
f
eld
Merg
e
b
r
anch 'pa
i
n
tabl
e
s'
of ssh
:
/
/
saalfeld@
r
epo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-20
Stepha
n
Saalfeld
Align will not accept models with less than 7 inliers
.
.
.
commit
|
commitdiff
|
tree
2009-06-19
Stephan Saalfeld
Ali
g
n will no
t
accept models with
l
ess than 7 inliers
.
.
.
commit
|
commitdiff
|
tree
2009-06-19
Stephan
Saalfeld
Workaround for a bug wh
i
ch was probably intr
o
duced
.
.
.
commit
|
commitdiff
|
tree
2009-06-17
Stephan Saalfeld
Merge branch 'paintables'
of ssh://saalf
e
ld@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-17
S
t
e
phan S
a
alfeld
Keep Po
i
n
t
s in world space and correct for
affine invariance
.
.
.
commit
|
commitdiff
|
tree
2009-06-16
Stephan
Sa
a
lfeld
K
e
ep Points in world s
p
a
c
e
and
c
orrect
for affine invarianc
e
.
.
.
commit
|
commitdiff
|
tree
2009-06-13
St
e
ph
a
n Saalfeld
Added
se
v
era
l
TODOs
.
commit
|
commitdiff
|
tree
2009-06-12
Stephan
S
aa
l
feld
M
e
rge bra
n
ch 'pa
i
ntab
l
es' of ssh://saalfeld@repo
.
o
r
.
.
.
commit
|
commitdiff
|
tree
2009-06-12
Stephan Sa
a
lfe
l
d
NonLinearTransf
o
rmMode ca
n
apply, b
u
t sti
l
l it looks
.
.
.
commit
|
commitdiff
|
tree
2009-06-12
Steph
a
n Saalf
e
ld
NonLine
a
rTransfor
m
Mode
in prog
r
ess
.
Patche
s
pa
i
nt
.
.
.
commit
|
commitdiff
|
tree
2009-06-12
Stephan Saa
l
f
e
l
d
Merge
b
ranc
h
'p
a
i
ntables' of ss
h
://saalfeld@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-12
St
e
p
h
an Saal
f
eld
Temporary c
o
m
m
i
t
on
No
n
LinearTransformMo
d
e
.
.
.
more
.
.
.
commit
|
commitdiff
|
tree
2009-06-11
Ste
p
han Saalfeld
Merge br
a
nc
h
'paint
a
bles' of ssh
:
//saalfeld@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-11
S
tephan Saalfeld
M
e
r
g
e
branch
'paintables
'
of ssh://saalfeld
@
r
e
po
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-10
Stephan Saa
l
fel
d
Merge
b
ranch 'p
a
inta
b
les' of s
s
h:
/
/saalfeld@repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2009-06-08
St
e
phan Saalfeld
Fixe
d
gener
i
cs
.
commit
|
commitdiff
|
tree
2009-04-23
St
e
p
han Saalfeld
M
erge bra
n
ch 'master' of ssh://
s
aalfeld@repo
.
or
.
c
z
.
.
.
commit
|
commitdiff
|
tree
2009-04-23
Stephan Saalfel
d
Remove
d
SIFT_Te
s
t
.
java
commit
|
commitdiff
|
tree
2009-04-23
Stephan Saalfeld
Added
c
omment t
o
TransformMeshM
a
pping
commit
|
commitdiff
|
tree
2009-04-23
Stephan Saa
l
feld
Added some mis
s
ing fina
l
statements in Trans
f
ormMes
h
commit
|
commitdiff
|
tree
2009-04-23
S
tepha
n
Saalfeld
Use
s
t
atic fields for dia
l
og
initializat
i
on in AlignTask
.
commit
|
commitdiff
|
tree
2009-04-06
Stephan Saalfeld
Fixed blend-alph
a
.
commit
|
commitdiff
|
tree
2009-04-03
Stephan Saal
f
e
ld
Put align multi-l
a
yer mosa
i
c i
n
TrakEM2
s
hape and inserted
.
.
.
commit
|
commitdiff
|
tree
2009-04-03
Stephan Sa
a
lfeld
E
x
tended
Trans
f
ormMesh
M
app
i
ng to create invers
e
ly trans
f
orme
.
.
.
commit
|
commitdiff
|
tree
2009-04-02
St
e
pha
n
Sa
a
lfeld
Merge
b
ranch 'ict' of ssh://saalfeld@rep
o
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2009-04-02
Stephan Saalfeld
M
u
l
t
i
-laye
r
mosaic
k
ing wi
t
h SIFT
usi
n
g
the proper new
.
.
.
commit
|
commitdiff
|
tree
2009-03-30
Stephan Saalfeld
Added
Exception
H
and
l
ing for the (not yet pushed) cha
n
g
e
s
in
commit
|
commitdiff
|
tree
2009-03-30
S
t
e
phan Saalfeld
ARGB-images will
b
e
lo
a
d
e
d as ARGB_
P
RE which speeds
.
.
.
commit
|
commitdiff
|
tree
2009-03-05
Stephan
Saa
l
feld
Fixed th
e
two-
s
ided export
o
f seria
l
ize
d
PointMatc
h
es
commit
|
commitdiff
|
tree
2009-03-05
Stephan Saal
f
eld
Merge branch 'u
n
u
id-m
i
pmaps' of ss
h
:
/
/
s
aalfeld@repo
.
.
.
commit
|
commitdiff
|
tree
2009-03-05
Stephan Saalfeld
Adde
d
clo
n
e() method to Coordina
t
eT
r
ansform and all
.
.
.
commit
|
commitdiff
|
tree
2009-03-05
Stephan Saalfeld
Added
b
ug
report
t
o TODO
commit
|
commitdiff
|
tree
2009-02-24
Stephan S
a
alf
e
ld
Re-added
5
1
e17a96c1
c
b33f2eee7da677
4
3d2552
2
fff232c
commit
|
commitdiff
|
tree
2009-02-23
S
t
ep
h
an Saalfeld
Me
r
ge br
a
nch 'ict' of ssh://
s
aal
f
eld@repo
.
or
.
cz
/
s
rv
.
.
.
commit
|
commitdiff
|
tree
2009-02-13
Stephan
Saalfeld
Merge
bra
n
ch
'ict' of ssh://saalfe
l
d@r
e
po
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2009-02-12
Stepha
n
Saalfeld
Merg
e
branch 'ict' of
s
s
h://saalfeld@repo
.
or
.
c
z
/
s
rv
.
.
.
commit
|
commitdiff
|
tree
2009-02-12
Stepha
n
Saalfeld
Merge
br
a
nch 'i
c
t
' of ssh://saalfe
l
d@re
p
o
.
o
r
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2009-02-12
Stephan S
a
alfe
l
d
Added
m
ethod getCoordinateTransfo
r
mBo
u
nding
B
ox to Patch
commit
|
commitdiff
|
tree
2009-02-06
St
e
phan Saalfeld
F
ix
e
d the Coordinat
e
T
r
ansfor
m
List XML
e
x
p
ort
.
commit
|
commitdiff
|
tree
2009-02-06
S
t
epha
n
Saalfeld
Added
the
method appendCoordinate
T
ransform to
Patch
.
.
.
commit
|
commitdiff
|
tree
2009-02-03
Stephan Saalfe
l
d
Updat
e
d TODO
commit
|
commitdiff
|
tree
2009-02-03
St
e
phan S
a
alfeld
Com
m
ent make
u
p
commit
|
commitdiff
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