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use and do not ignore alpha in helper method
2012-06-26
Stephan Saal
f
eld
use and
do not ignore al
p
ha in
h
el
p
e
r meth
o
d
commit
|
commitdiff
|
tree
2012-06-21
Stephan Sa
a
lfeld
use t
h
e
n
ew sequen
t
ial dialogs in "montage"
for
a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stepha
n
S
aalfel
d
M
e
r
ge bra
n
ch '
m
aster'
o
f
ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-20
S
t
ephan
S
a
a
lfeld
fixed
r
ange check in layer alignment
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfel
d
fixed conditio
n
c
heck in Align L
a
yers for regularization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan
Saalfeld
Merge branch 'master' into regularized-aff
i
ne
commit
|
commitdiff
|
tree
2012-06-08
Stephan
Saalf
e
ld
do not c
o
nsider disconnected tiles
commit
|
commitdiff
|
tree
2012-06-08
Ste
p
han Saalfeld
M
e
rge
branch 'regul
a
rized-affine
'
of ssh://repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan
S
aalfeld
pr
e
-align
g
r
aphs
and match
o
n
ly ove
r
l
a
pping tiles
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n Saa
l
fel
d
p
re-a
l
ign
g
raphs and match only
overlapping tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan
S
aalfeld
i
n
i
t
i
ali
z
e Tile models and not only
p
atches in alignGraphs
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n Saalfeld
change
d
al
i
gnGra
p
hs input collections from
Set to It
e
rable
commit
|
commitdiff
|
tree
2012-06-08
Stephan S
a
alfel
d
ma
k
e sure th
a
t st
a
tic paramete
r
s
do
not override each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Step
h
an S
a
alfeld
remov
e
spurious import
commit
|
commitdiff
|
tree
2012-06-05
S
t
epha
n
S
a
a
l
fe
l
d
w
o
rkaround
Orac
l
e
javac
generics issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan
Saalf
e
ld
multi-layer-mosai
c
uses
P
ar
a
m/Pa
r
a
m
O
p
timize
.
setup(S
t
ring
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
tephan
S
a
a
lfel
d
mon
t
age layer
s
uses Para
m
Opti
m
ize
.
set
u
p instead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
do n
o
t fix a random tile if
n
one is fixe
d
commit
|
commitdiff
|
tree
2012-05-29
Ste
p
han Saalfeld
Con
d
ensed
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
Stephan Saalfeld
Added
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
Steph
a
n
Saalfeld
Merge branc
h
'mast
e
r' into
r
e
g
ularized-aff
i
ne
commit
|
commitdiff
|
tree
2012-05-21
Stepha
n
Saalfeld
added *None* field to layer ra
n
ge reference sel
e
ction
commit
|
commitdiff
|
tree
2012-05-21
St
e
phan Saalfe
l
d
s
p
lit Alig
n
.
ParamOptimize
dialogs in p
i
eces th
a
t
fi
t
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Ste
p
han Saalfeld
a
dded GenericAffi
n
eTile2D
commit
|
commitdiff
|
tree
2012-05-21
S
t
ephan Saal
f
eld
generalize
d
Ab
s
tract
A
f
fine
T
ile2D gener
i
c
paramete
r
commit
|
commitdiff
|
tree
2012-05-15
Stephan Saalfel
d
track
r
efacto
r
ing in mpi
c
bg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan
S
aalfeld
added regularize
d
affine l
a
yer alignment,
commit
|
commitdiff
|
tree
2012-03-28
Stephan
Saal
f
eld
fixed c
r
eateImage
(
): use pre
m
ult
i
plied r
a
ster
commit
|
commitdiff
|
tree
2012-03-27
Step
h
a
n
Saalfeld
do not prin
t
t
he mip
m
a
p
scale
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfel
d
for n
o
w, do
n
ot use p
r
e-multiplied
a
lpha since
i
t
does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Fixe
d
w
rong painting
of Patches when using a downsa
m
pler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Step
h
an Sa
a
lfe
l
d
DownsamplerMipMaps now consi
s
ten
t
ly uses combined
d
ownsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
fixed
Downs
a
mplerMipMaps ble
n
ding mer
g
ed alpha i
n
to
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Sa
a
lf
e
ld
Downsa
m
pler test
s
till
sh
o
ws it
b
ein
g
significantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Sa
a
lfeld
Fixed Downsampl
e
r: range check
i
n byte conversion was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
tephan Saa
l
feld
Merge bran
c
h 'integral' o
f
ssh://repo
.
or
.
cz/sr
v
/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saal
f
eld
a
d
d
e
d
miss
i
ng pac
k
age to Fakefile
commit
|
commitdiff
|
tree
2012-03-08
Stephan
S
aal
f
eld
Merge branch 'master
'
of ssh://repo
.
o
r
.
c
z/
s
r
v/git/trak
e
m2
commit
|
commitdiff
|
tree
2012-03-08
Stephan
Saalfeld
fix loca
l
scale e
s
timate
commit
|
commitdiff
|
tree
2012-03-07
Stephan Sa
a
lfeld
added getLocalScale(x,y) method to Patch
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalf
e
ld
patch does no
t
propagate NonInvertibl
e
M
o
delExc
e
ption
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
S
t
ephan Saalfeld
Merge
b
ra
n
ch 'master' of
ss
h
://re
p
o
.
or
.
cz/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2012-03-07
S
tephan
S
aalfeld
added methods to fet
c
h the closest triang
l
e of a tra
n
sform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
S
t
ephan Saalfeld
in the mi
d
d
l
e of
.
.
.
amend
w
ith final commit
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saalfeld
demonstra
t
e byte c
o
nversion in an ex
t
ra loop t
o
b
e
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Saalfel
d
M
e
rge br
a
nch 'integral' of ssh://repo
.
o
r
.
cz/srv/g
i
t
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stepha
n
Saalfeld
D
o
w
ns
a
mpler
f
in
i
shed
.
I hav
e
t
es
t
ed seve
r
al varia
n
ts
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Stephan
Sa
a
lfeld
experimantal co
m
mit:
commit
|
commitdiff
|
tree
2012-02-23
Stephan
S
aalfeld
Me
r
ge
b
ra
n
ch 'inte
g
ral' of
ssh:
/
/repo
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
S
t
ephan Saalfeld
Downsampler w
i
th alpha-chan
n
e
l
s
render
i
ng i
n
to byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
Stephan Saalfe
l
d
Me
r
ge
b
ranch 'mas
t
er' of ss
h
://r
e
p
o
.
or
.
c
z/srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2012-02-22
Stephan Saalfeld
set int
e
rpo
l
a
t
i
o
n
mode to actu
a
lly inter
p
ol
a
te masks
commit
|
commitdiff
|
tree
2011-10-01
S
tephan S
a
a
lfeld
mak
e
IJ
.
log to Utils
.
log in El
a
sti
c
Laye
r
A
lignm
e
nt
commit
|
commitdiff
|
tree
2011-08-10
S
tep
h
a
n Saal
f
eld
u
se MovingLeast
S
quaresTr
a
nsf
o
rm2 in
Elasti
c
LayerAlignment
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfe
l
d
use MovingLeastSquaresTrans
f
o
r
m2 in ElasticM
o
nta
g
e
commit
|
commitdiff
|
tree
2011-08-10
Steph
a
n
Saalfeld
use
M
o
v
ingLeastSquaresT
r
ansform2 for war
p
ing
in multi
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
S
t
ephan Sa
a
lfe
l
d
use
M
ovingLeastSquaresTransfo
r
m2 in No
n
LinearTra
n
s
formMode
commit
|
commitdiff
|
tree
2011-08-10
Step
h
a
n
S
aalfeld
Added MovingLeastSquaresTransform2 extending
commit
|
commitdiff
|
tree
2011-08-07
S
t
e
p
han
S
aalfeld
Elastic
L
ayerAlignment: Whe
n
transferring layer transformatio
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
Stephan Saalfeld
flush cac
h
e bet
w
een layer exports (t
h
e cache is otherwi
s
e
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
St
e
phan
S
aalfeld
free memory before
running memory
d
emanding tas
k
s in
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Steph
a
n
Saalfe
l
d
fixe
d
bu
g
in l
i
n
e
arLayerAli
g
n
m
ent
,
calculate and apply
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
Stephan S
a
a
l
feld
flus
h
image cache me
m
o
r
y
b
efore doing a mo
n
tage
commit
|
commitdiff
|
tree
2011-06-29
Step
h
an Saalfeld
El
a
st
i
cMontage:
commit
|
commitdiff
|
tree
2011-06-29
Stephan Saalf
e
ld
Merge branch '
m
aster' into elastic-al
i
gn
commit
|
commitdiff
|
tree
2011-06-28
Stephan Sa
a
lfeld
Mer
g
e
branch 'master' i
n
to elastic-align
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalf
e
ld
A
dded `seems-to-work' elastic montagin
g
.
Missin
g
parts
a
r
e
commit
|
commitdiff
|
tree
2011-06-28
St
e
p
han Saalfeld
* ma
d
e Patch
.
Pa
t
chIm
a
ge a
s
tatic class (it has no re
f
e
r
e
nces
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Stephan Sa
a
lfel
d
a
d
ded Pair to
A
bstr
a
ct
commit
|
commitdiff
|
tree
2011-06-23
Stepha
n
Saalfeld
Align
.
ja
v
a: moved twice impl
e
me
n
ted
M
odel fit
t
ing an
d
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saal
f
eld
Ela
s
ti
c
Align uses t
h
e
local sif
t
Param for ident
i
fying
commit
|
commitdiff
|
tree
2011-06-23
Ste
p
han
Saal
f
eld
TransformMeshMappingWithMask rounds trian
g
el bounding
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan Saalfeld
attempt to get shared
f
u
nction for layer
a
l
ignment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
S
t
ephan
Saalfeld
titled
m
o
n
tage
dialog
`Montage'
c
on
s
iste
n
tly w
i
th the
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan Saalfeld
Fixed
T
hr
e
a
d interru
p
tion in Align
.
con
n
ectT
i
lePai
r
s
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Step
h
an
Saa
l
f
e
ld
`Montage a
l
l
images in this
l
ayer':
commit
|
commitdiff
|
tree
2011-06-17
Stephan Saalfeld
Ela
s
ticAlig
n
fixes:
commit
|
commitdiff
|
tree
2011-06-16
S
t
e
phan Saa
l
feld
Mer
g
e branch '
m
aster'
i
nto e
l
astic-alig
n
commit
|
commitdiff
|
tree
2011-06-16
Stephan Saalfeld
comment test rpin
t
commit
|
commitdiff
|
tree
2011-05-27
S
tephan Saalfel
d
started with E
l
ast
i
c Alignment
,
l
ayer alignm
e
n
t
alread
y
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Steph
a
n Saalfeld
Merg
e
branch
'mast
e
r' in
t
o mpicbg-m
o
del-interface
commit
|
commitdiff
|
tree
2010-11-20
Stephan Saalfeld
t
r
a
c
king
m
picb
g
model
-
interface
commit
|
commitdiff
|
tree
2010-08-18
Stephan Saalfeld
mpi
c
bg
.
trakem2
.
trans
f
orm
.
T
r
ansformMesh extrapolates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Step
h
an Sa
a
lfeld
F
i
x
e
d bug
2
02
commit
|
commitdiff
|
tree
2010-08-16
Ste
p
han Saalfeld
* add minimal ab
s
o
l
ute n
u
mber
of inliers as
a parameter
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Merge br
a
nch 'master' in
t
o rej
e
ctconstantbackgro
u
nd
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfel
d
Me
r
ge bra
n
c
h
'mas
t
er'
o
f
ssh
:
//rep
o
.
or
.
cz/srv/git/tr
a
kem2
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfeld
Mer
g
e branch 'rejectconsta
n
t
b
ackgroun
d
' of s
s
h
://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfe
l
d
fin
d
ing con
n
ected tiles moved
in
t
o b
a
se class
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfeld
u
se
outli
e
r filter in
o
ptimizer
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfeld
finding co
n
n
e
cted tiles moved int
o
base clas
s
commit
|
commitdiff
|
tree
2010-08-06
Stephan Sa
a
l
f
eld
Merge bra
n
ch 'reje
c
tconstantbackground'
of ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
Steph
a
n S
a
al
f
eld
Fix
wrong param
e
t
e
r choic
e
in AlignTask
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saa
l
feld
M
erge branch
'mast
e
r'
into rejectconstantba
c
kgr
o
und
commit
|
commitdiff
|
tree
2010-08-05
St
e
p
han Saalfeld
extended
verbosity of the tile matching
commit
|
commitdiff
|
tree
2010-08-05
S
t
ephan Saalfeld
Adde
d
a filter to reject constan
t
b
a
ckground
patterns
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stepha
n
Saal
f
e
l
d
Merge
branch 'master' of ssh://rep
o
.
or
.
cz/srv/git/
t
rake
m
2
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Recovered the mos
t
i
mp
o
rtatn
of Igna
c
i
o's p
r
e
v
ious
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
S
tephan Saalfe
l
d
M
e
rge branch
'
master'
int
o
l
e
n
s-m
o
del
commit
|
commitdiff
|
tree
2010-03-19
Step
h
an Saalfeld
Created P
o
ly
n
omi
a
lModel2D
,
a wrapper for
Verena
K
aynig's
commit
|
commitdiff
|
tree
next