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fixed bug in linearLayerAlignment, calculate and apply the desired Model
2011-08-03
Stephan Saalfel
d
fixed bug
i
n linearLayerAlignment,
calculate a
n
d apply
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
Stephan Saalfe
l
d
flu
s
h image cache memory befo
r
e doing
a
mon
t
age
commit
|
commitdiff
|
tree
2011-06-29
Step
h
an Saalfeld
Elast
i
cMontage:
commit
|
commitdiff
|
tree
2011-06-29
Stephan Saalfeld
Merge b
r
a
nch 'master'
into elastic-
a
lign
commit
|
commitdiff
|
tree
2011-06-28
S
teph
a
n Saalfeld
M
e
rge branch 'm
a
s
ter' into elastic-
a
lign
commit
|
commitdiff
|
tree
2011-06-28
Ste
p
han
S
a
alfeld
Add
e
d `seems-t
o
-work' elastic montaging
.
Missing parts are
commit
|
commitdiff
|
tree
2011-06-28
Step
h
an Saalfel
d
* made Patch
.
PatchImage a static class (
i
t has no references
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Stephan
Saalfeld
added Pai
r
to
A
bstrac
t
commit
|
commitdiff
|
tree
2011-06-23
Step
h
an S
a
alfeld
Align
.
java: moved t
w
i
c
e implem
e
nted Mode
l
fitting and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Stephan
S
aalfeld
Ela
s
tic
A
lign uses the local siftParam f
o
r iden
t
ify
i
ng
commit
|
commitdiff
|
tree
2011-06-23
Stephan
S
aalfeld
TransformMeshMappingWithMask r
o
unds tri
a
n
gel b
o
undin
g
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
S
t
ephan Sa
a
l
f
eld
attempt to
g
et
shared function
for
l
ay
e
r a
l
ignment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
S
tephan S
a
alfel
d
titled mo
n
tage dial
o
g `Montage
'
c
onsistently wit
h
the
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan Saalfeld
Fix
e
d
T
h
read
i
nt
e
rru
p
tion
i
n Al
i
g
n
.
conne
c
tTilePairs
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Stephan Saalfeld
`Montage a
l
l images
in thi
s
layer':
commit
|
commitdiff
|
tree
2011-06-17
Stephan Saalfeld
E
lasticA
l
ig
n
fi
x
es:
commit
|
commitdiff
|
tree
2011-06-16
St
e
ph
a
n
Sa
a
lfeld
Merge bra
n
ch 'master'
i
nto elastic-align
commit
|
commitdiff
|
tree
2011-06-16
S
t
ephan Sa
a
lfeld
comme
n
t
test
rpint
commit
|
commitdiff
|
tree
2011-05-27
S
tephan
S
aalfeld
start
e
d wi
t
h Elas
t
ic Alignment, layer alignment
a
lrea
d
y
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Stephan Saalfeld
Mer
g
e branch
'master' into mpicbg-mod
e
l-interfac
e
commit
|
commitdiff
|
tree
2010-11-20
Stephan
S
aalfeld
tr
a
c
k
ing mpicbg mod
e
l
-
interfa
c
e
commit
|
commitdiff
|
tree
2010-08-18
Stephan Sa
a
l
fel
d
m
p
i
cbg
.
trakem2
.
tr
a
n
sf
o
rm
.
TransformMesh extrapo
l
ates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
F
i
xed bug 20
2
commit
|
commitdiff
|
tree
2010-08-16
S
t
e
p
han Saalfeld
* add minimal ab
s
olute number of inliers as a parameter
commit
|
commitdiff
|
tree
2010-08-16
S
t
e
p
han Saalfeld
Merge
branch
'
m
aste
r
' into rejectconstantb
a
c
k
ground
commit
|
commitdiff
|
tree
2010-08-16
Stephan
Sa
a
lfeld
Mer
g
e branch 'm
a
ster' of
ssh://repo
.
or
.
cz/sr
v
/g
i
t/trakem2
commit
|
commitdiff
|
tree
2010-08-07
S
t
ephan Saal
f
eld
Merge bran
c
h
'reje
c
tcon
s
t
a
n
t
b
ackground' of ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfeld
find
i
ng connected tiles mov
e
d i
n
t
o base class
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalf
e
ld
use outlier filt
e
r in opti
m
i
zer
commit
|
commitdiff
|
tree
2010-08-07
S
t
ephan Saalfeld
f
inding co
n
nected ti
l
es moved int
o
base class
commit
|
commitdiff
|
tree
2010-08-06
Ste
p
ha
n
S
a
alfeld
M
er
g
e branch 'rejectconstantbackground' of
ssh
:
//repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
Stephan Saa
l
feld
Fix
w
rong p
a
r
a
me
t
e
r
choi
c
e in AlignTask
commit
|
commitdiff
|
tree
2010-08-05
St
e
phan
Sa
a
lfeld
Merge br
a
n
c
h 'mas
t
er' into
rejectconstantbackgro
u
nd
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saalfeld
extended
verbosity of the tile ma
t
ching
commit
|
commitdiff
|
tree
2010-08-05
Stephan Sa
a
lfeld
Adde
d
a filt
e
r to reject c
o
n
s
tant background patterns
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Steph
a
n Saalfeld
M
e
rge branch
'
master' of ssh:
/
/repo
.
or
.
cz/srv/git/t
r
akem2
commit
|
commitdiff
|
tree
2010-03-19
Steph
a
n
Saalfeld
Re
c
overed the most im
p
ortatn of Igna
c
io's previous
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Ste
p
han Saalfeld
Merge branch 'maste
r
' into l
e
ns-mo
d
el
commit
|
commitdiff
|
tree
2010-03-19
S
tephan Saalfel
d
C
reated Pol
y
n
omialM
o
del
2
D
,
a wrapper for
V
erena K
a
ynig'
s
commit
|
commitdiff
|
tree
2010-03-18
Stephan Sa
a
lfeld
Added the m
a
ximal ac
c
epte
d
factor to mean PointMatch
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
Step
h
an Saalfeld
Remove matches
w
ith la
r
ge displaceme
n
t from t
h
e
c
on
f
igur
a
tio
n
commit
|
commitdiff
|
tree
2010-02-23
S
te
p
h
an Saalfel
d
fixed ca
l
ibra
t
ion of s
c
al
e
d snapshots when exporting
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
S
t
epha
n
Saalf
e
ld
fixed calibration of scale
d
snapsh
o
ts
commit
|
commitdiff
|
tree
2010-02-19
Stephan
Sa
a
lfel
d
A
lignT
a
sk:
w
hen
deformi
n
g, tiles A
R
E
a
lready in place
commit
|
commitdiff
|
tree
2010-02-19
Stephan
Saalfeld
Ali
g
n
T
ask: Fixed
mi
s
s
u
se
o
f a static
v
ariable
.
commit
|
commitdiff
|
tree
2010-02-19
Ste
p
h
an Saalfeld
Rem
o
v
e the
never
used shake meth
o
d
from abstract Model
.
commit
|
commitdiff
|
tree
2010-02-10
Stepha
n
Sa
a
lfel
d
Fixed
a
bug that
ma
d
e
t
he original
i
mage appear behind
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalfe
l
d
Synchro
n
ized
s
creenPatchRanges
commit
|
commitdiff
|
tree
2010-02-09
Stephan
S
a
alfeld
minor cleanup in
l
enscorrection
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalfeld
A
dded Transform
M
e
s
hM
a
ppingWithMasks
f
or mo
r
e efficient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
Stepha
n
Saalfel
d
NonLinearTra
n
s
f
ormMode
can propagate th
e
transformation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
S
tep
h
an Saa
l
fel
d
For
n
ow
,
don'
t
s
c
ale max
E
psilon
.
commit
|
commitdiff
|
tree
2010-02-07
Step
h
a
n
Saalfeld
Align Multi-L
a
yer
-
Mosa
i
c: Use up to 2
x
m
axOctaveS
i
ze
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Sa
a
l
feld
F
i
nished the deform operation to consid
e
r
all
graphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stepha
n
Saalfeld
F
i
xed Fl
o
at
.
M
I
N
_
V
ALUE to
Float
.
MAX_VALUE where
it re
m
a
ine
d
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan
Sa
a
lfel
d
alignMu
l
tiLaye
r
M
o
saic fin
a
l
l
y us
e
s
g
raph-based pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Step
h
an Saalfeld
changed default value of SI
F
T
.
maxOctaveSi
z
e = 600
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfeld
fixed pair
O
verlapp
i
ngTiles(
L
is
t
, L
i
st,
List[] )
commit
|
commitdiff
|
tree
2010-01-28
Stephan Saalfe
l
d
added
c
orrespo
n
dence weight
a
s a
parameter to Align
.
.
.
commit
|
commitdiff
|
tree
2009-11-05
S
tephan Saalfeld
Merge branch
'
m
a
s
te
r
' in
t
o bunwarpj
commit
|
commitdiff
|
tree
2009-11-04
St
e
pha
n
Saalfeld
M
e
rge branch 'master' in
t
o bun
w
arpj
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Fixed
CompositeModes to
work in the follow
i
ng
configurations
commit
|
commitdiff
|
tree
2009-11-03
S
t
ephan Saalfeld
Re
v
er
t
"Work a
r
o
u
nd annoying bug in
Graphics2D
,
in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stepha
n
S
aalf
e
ld
Fixed Compo
s
i
teModes to
work in
the follow
i
n
g con
f
i
gurations
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Sepa
r
ating
AlignLayers
T
as
k
from
A
l
ignTask
.
commit
|
commitdiff
|
tree
2009-11-03
Stepha
n
Saalfeld
Revert
"
Wo
r
k around
anno
y
ing bug
i
n Graphi
c
s2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan
Saalfeld
Merge branch 'master' into comp
o
site-mod
e
s
commit
|
commitdiff
|
tree
2009-11-03
Step
h
an
Saalfe
l
d
A
d
dA
R
GBCom
p
osite can han
d
le image with no alpha
.
commit
|
commitdiff
|
tree
2009-11-03
St
e
phan
S
aalfeld
A
d
ded a comment in
A
lign
commit
|
commitdiff
|
tree
2009-10-14
Stephan Saalfeld
refacto
r
ed a misn
a
med m
e
thod and statified
s
ome parameters
in
commit
|
commitdiff
|
tree
2009-10-14
Stephan S
a
alfeld
synchronized potentially concur
r
ency unsafe matc
h
i
n
sertion
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Stephan Saa
l
feld
Fixed
the
geo
m
etry i
s
sues and a
d
ded support for
all
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Stephan Sa
a
lfeld
Catching and handling OutOfMemoryEr
r
ors
in Fe
a
tur
e
Extraction
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
St
e
p
h
an Saalfeld
Cosmetics in Ali
g
nTask and Simil
a
rity
M
odel2D
commit
|
commitdiff
|
tree
2009-10-08
Steph
a
n Saalfeld
le
n
scorre
c
ti
o
n stops now later but
l
atest after the
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan S
a
a
lfeld
Merge
b
ranch
'
mas
t
er' of ssh:
/
/
r
epo
.
or
.
c
z
/srv/git/trakem2
commit
|
commitdiff
|
tree
2009-10-07
Ste
p
h
a
n Saalf
e
l
d
Merg
e
branch
'
m
a
ster' of ssh://r
e
po
.
or
.
cz/srv/git/
t
rake
m
2
commit
|
commitdiff
|
tree
2009-10-07
Stephan
Saalfeld
F
i
x 0
.
5grey background
for ByteProce
s
s
o
r
s
in
commit
|
commitdiff
|
tree
2009-09-24
Stephan Saalfe
l
d
Merge branch '
m
aster
'
of
s
s
h
://repo
.
or
.
cz/srv/
g
i
t/tr
a
kem2
commit
|
commitdiff
|
tree
2009-09-23
St
e
phan
Saalfeld
Saving a lot of RAM in
v
is
u
ali
z
ing the
lens distor
t
ion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
S
t
ep
h
an Saa
l
feld
Merg
e
branc
h
'st
a
c
k' i
n
to align
commit
|
commitdiff
|
tree
2009-09-17
Stepha
n
S
aalfel
d
Hopefully fixe
d
the
scaling in St
a
ck
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfe
l
d
Me
r
g
e
br
a
nch 'stack' int
o
align
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
h
an
Saalf
e
ld
Merge bran
c
h 'stack' of ssh://repo
.
o
r
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
St
e
phan
S
aalfeld
Merge branch 'st
a
ck' into align
commit
|
commitdiff
|
tree
2009-09-17
S
tephan Saalfeld
separated
th
e
ac
t
ual alignLayersLine
a
rly job
f
rom the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saal
f
e
l
d
Loader uses db_lock
commit
|
commitdiff
|
tree
2009-09-16
Stephan Saalfeld
M
e
rg
e
branch '
a
l
i
gn' of ssh://re
p
o
.
or
.
cz/sr
v
/gi
t
/
trake
m
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
Ste
p
han Sa
a
l
feld
Fixed a b
u
g
that prevent
e
d the
m
u
l
ti-layer m
o
saicking
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Steph
a
n
Saalfeld
Merge b
r
anch
'st
a
ck' of ssh:/
/
repo
.
or
.
cz/srv/g
i
t/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
S
t
e
p
h
an Saalfeld
a v
e
ry intermediate commit that inte
r
rupts
me a
t
starting the
commit
|
commitdiff
|
tree
2009-09-11
Stephan Saalfeld
decaching was not successfu
l
---t
r
uin
g
a
nother one
.
.
.
commit
|
commitdiff
|
tree
2009-09-11
Step
h
an
S
aalfeld
Decache processed
p
a
tc
h
es after applicat
i
on
o
f t
h
e CT
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
Merge
b
ranch
'align' of ssh
:
/
/
repo
.
or
.
cz/srv/g
i
t/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
S
t
eph
a
n Saalfeld
Added a
deform opt
i
on to
t
he multi-layer-m
o
s
a
ic me
t
hod
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan
Saalfeld
Added
a
deform option to the
m
ulti-layer
-
mosaic method
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
Added a co
n
ve
n
ience method to export
a flat ima
g
e for
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan
Saalfeld
Cosmetics (remov
e
d some non-required
i
mp
o
rts and empty
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan
Saalfel
d
A
a
st
a
tic method to get the bounding
b
o
x
of a
coll
e
ctio
n
of
commit
|
commitdiff
|
tree
2009-09-02
S
t
e
phan Saalfeld
* Fix
e
d wr
o
ng b
l
urri
n
g
commit
|
commitdiff
|
tree
next