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Merge branch 'master' into elastic-align
2011-06-29
Stephan Saalfeld
Merge branch
'
master' into elastic-al
i
gn
commit
|
commitdiff
|
tree
2011-06-28
S
t
ephan
S
aalfeld
Merge branch '
m
ast
e
r' in
t
o elastic-al
i
gn
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfe
l
d
Added `s
e
ems-to-work' elas
t
ic montaging
.
Missing part
s
are
commit
|
commitdiff
|
tree
2011-06-28
Stepha
n
Saalf
e
ld
* mad
e
P
atch
.
Patc
h
Image a static class (it
has
n
o refer
e
nces
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
S
tepha
n
Saalfe
l
d
added Pair
to Abstract
commit
|
commitdiff
|
tree
2011-06-23
Ste
p
han Saa
l
f
e
ld
Align
.
j
a
va:
mov
e
d
t
wice
impl
e
men
t
ed
Mode
l
fitting and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saalfeld
ElasticAlign uses the
l
oc
a
l si
f
tParam
f
o
r identifying
commit
|
commitdiff
|
tree
2011-06-23
S
tep
h
an Sa
a
l
feld
Tr
a
ns
f
orm
M
eshMappingWi
t
hMask rou
n
d
s triange
l
b
o
undin
g
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan Saalfeld
attempt to ge
t
shared
f
unct
i
on for layer
a
li
g
nme
n
t
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Step
h
an Saal
f
eld
titled mo
n
tage dialog `Mon
t
ag
e
' consis
t
entl
y
with the
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan
Sa
a
lf
e
ld
Fixed Thread i
n
terruption
i
n Align
.
connectTilePairs
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
S
t
ephan
S
aalfeld
`Montage
all
im
a
ges in this layer':
commit
|
commitdiff
|
tree
2011-06-17
Stephan Saalfeld
Elast
i
cAlign fixes:
commit
|
commitdiff
|
tree
2011-06-16
Stephan Saalfeld
M
erge
branch 'master' into
elastic-align
commit
|
commitdiff
|
tree
2011-06-16
St
e
phan Saal
f
eld
com
m
en
t
t
es
t
r
p
int
commit
|
commitdiff
|
tree
2011-05-27
S
te
p
han Saalf
e
ld
s
ta
r
ted with Elasti
c
Align
m
ent, layer alignmen
t
alr
e
ady
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Stephan Saa
l
fel
d
Merge branch 'm
a
ster' into
mpicbg-
m
odel-interface
commit
|
commitdiff
|
tree
2010-11-20
S
teph
a
n Saalfeld
t
racking
m
picbg model-interf
a
c
e
commit
|
commitdiff
|
tree
2010-08-18
Stephan
Saalfeld
mpicbg
.
tra
k
em2
.
transform
.
TransformMesh extra
p
olates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
S
tep
h
an Saalfeld
F
i
x
ed bu
g
202
commit
|
commitdiff
|
tree
2010-08-16
Steph
a
n S
a
alfeld
* add minimal a
b
sol
u
te
number of inl
i
ers as a parameter
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfel
d
M
e
rge branch 'm
a
ster' into rejectc
o
n
s
t
a
n
tbackg
r
ound
commit
|
commitdiff
|
tree
2010-08-16
S
t
ep
h
an Saa
l
feld
Merge b
r
anch
'
master'
o
f ssh://
r
epo
.
or
.
cz/s
r
v
/
git/trakem2
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saa
l
f
e
l
d
Merge
branch 're
j
ectc
o
n
s
tan
t
backgroun
d
' of
s
s
h://rep
o
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
Step
h
an Saa
l
feld
f
indi
n
g connected tiles m
o
ved into b
a
se
cla
s
s
commit
|
commitdiff
|
tree
2010-08-07
Ste
p
han S
a
al
f
e
l
d
use
outlier filter in
o
pt
i
mizer
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfe
l
d
findin
g
connecte
d
tiles moved into bas
e
class
commit
|
commitdiff
|
tree
2010-08-06
Step
h
an Saalfel
d
M
erge b
r
a
nch 're
j
ect
c
on
s
tantback
g
round' of ssh://
r
epo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
Stepha
n
Saalfel
d
Fix
w
rong p
a
ram
e
te
r
choice
i
n
A
lignTa
s
k
commit
|
commitdiff
|
tree
2010-08-05
Step
h
an Saalfeld
Merge bra
n
ch 'master
'
i
n
t
o rejec
t
constantba
c
kground
commit
|
commitdiff
|
tree
2010-08-05
S
t
ephan Saal
f
e
ld
extend
e
d
v
e
rbosity of t
h
e tile m
a
t
c
hing
commit
|
commitdiff
|
tree
2010-08-05
Stephan
S
aalfeld
Added
a
filter t
o
reject constant bac
k
groun
d
patter
n
s
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Ste
p
han Saalfeld
Merge branch 'maste
r
' of ssh://
r
epo
.
or
.
cz/srv/git/tr
a
kem2
commit
|
commitdiff
|
tree
2010-03-19
S
t
ephan Saalfeld
R
e
covered the most import
a
tn of Ignacio's
p
r
e
vious
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saa
l
feld
Me
r
g
e branch
'
m
aster' into lens-model
commit
|
commitdiff
|
tree
2010-03-19
S
tephan Saalfeld
C
r
eated Polynomial
M
od
e
l2D, a
w
rapper for
Verena Kay
n
ig's
commit
|
commitdiff
|
tree
2010-03-18
Stephan Saalfeld
Added th
e
ma
x
ima
l
acce
p
ted fact
o
r to
mean Poin
t
Match
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
Ste
p
han Saalf
e
ld
Remove matches wit
h
l
a
rge dis
p
lacement from the configuratio
n
commit
|
commitdiff
|
tree
2010-02-23
Stephan Saa
l
feld
fixed calibration of scaled snapshots when ex
p
or
t
i
ng
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Stephan Saalfel
d
fixed calibrati
o
n
of scaled sna
p
shots
commit
|
commitdiff
|
tree
2010-02-19
Step
h
a
n
Saa
l
f
eld
Align
T
ask: whe
n
defo
r
ming, t
i
les ARE already in place
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfeld
AlignT
a
sk: Fixed mi
s
suse of
a
static variable
.
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfeld
Remo
v
e the never used
s
hake method from a
b
stract Model
.
commit
|
commitdiff
|
tree
2010-02-10
S
tephan Saalfeld
Fixed a
b
ug
t
h
at made the original i
m
age
appear behind
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalfeld
Synchronized
scree
n
PatchRa
n
g
es
commit
|
commitdiff
|
tree
2010-02-09
Steph
a
n Saa
l
fe
l
d
m
inor cleanup in lens
c
o
rrection
commit
|
commitdiff
|
tree
2010-02-09
St
e
phan
Saalfel
d
Added Transf
o
rmMesh
M
appingWithM
a
sks for
m
ore e
f
ficient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
S
t
epha
n
S
a
alfeld
NonL
i
near
T
rans
f
o
rm
M
o
de can propag
a
te the
transformation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan
Sa
a
lfeld
F
or
now, don't scale maxEp
s
ilon
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Sa
a
lfeld
Align
Multi-Layer-Mo
s
aic: U
s
e up to 2x m
a
xOctaveSize
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saa
l
feld
Finishe
d
the deform operat
i
o
n to consid
e
r all graphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
St
e
p
h
a
n
Saalfeld
Fixed
Float
.
MIN_VALUE to Flo
a
t
.
MAX_VALUE where i
t
remained
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stepha
n
Saalfeld
ali
g
nMultiLayerMos
a
ic
f
inall
y
uses
graph-based
p
re
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Sa
a
lfeld
changed def
a
ult value o
f
SIFT
.
ma
x
Octav
e
S
i
ze = 600
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfeld
fixed pairOverlappingTiles( List, Li
s
t, List[] )
commit
|
commitdiff
|
tree
2010-01-28
Stephan Saalfeld
added
corresp
o
nden
c
e
w
e
ight as a
p
arameter to Ali
g
n
.
.
.
commit
|
commitdiff
|
tree
2009-11-05
Stephan
S
aalfeld
Merge branch 'master
'
into
b
unwa
r
p
j
commit
|
commitdiff
|
tree
2009-11-04
Step
h
an Saalfeld
Mer
g
e branch
'
maste
r
' in
t
o bunw
a
rpj
commit
|
commitdiff
|
tree
2009-11-03
St
e
p
h
an
S
aalfeld
Fixe
d
CompositeModes to work in the following configu
r
a
t
ions
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfel
d
Revert "Work around
a
n
n
oying bug in Graphics2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan
Saalfeld
Fixed
C
ompos
i
teModes to work
i
n the followin
g
confi
g
uration
s
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Separ
a
t
ing A
l
ignLayersTask f
r
om Align
T
ask
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
R
evert
"
Work
around a
n
no
y
ing bug in Graphics2D, i
n
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan
S
aalfeld
Merge branc
h
'
m
aster'
i
n
to composi
t
e-modes
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
AddARGBComposite can handle image
w
i
t
h
no al
p
ha
.
commit
|
commitdiff
|
tree
2009-11-03
Steph
a
n
Sa
a
lfeld
A
d
d
ed
a
comment
i
n Align
commit
|
commitdiff
|
tree
2009-10-14
S
tephan
Saa
l
feld
refactored a mis
n
amed method
a
n
d statif
i
ed
so
m
e pa
r
ameters in
commit
|
commitdiff
|
tree
2009-10-14
Stephan Saalfeld
s
y
nchron
i
zed potentially concurrency unsafe match insertion
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Stephan S
a
alfel
d
F
i
x
ed the
g
eometry
i
ssu
e
s a
n
d
a
d
d
ed support f
o
r all
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Stephan Saalfe
l
d
Catching
and handlin
g
Out
O
fMe
m
oryErrors i
n
FeatureEx
t
r
a
ction
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalfeld
Cosmetic
s
i
n
AlignTask and Si
m
ilarityMod
e
l2D
commit
|
commitdiff
|
tree
2009-10-08
Stephan Sa
a
lfeld
l
e
nscorrection stops no
w
later but
la
t
est after
t
he
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalfeld
Merge
b
ranch 'master'
o
f ssh://repo
.
o
r
.
cz/
s
rv/g
i
t/
t
rak
e
m2
commit
|
commitdiff
|
tree
2009-10-07
St
e
phan
Saa
l
feld
Merg
e
b
ranch 'master
'
o
f ssh:
/
/repo
.
or
.
cz/srv/git/tra
k
e
m
2
commit
|
commitdiff
|
tree
2009-10-07
St
e
phan Saalfeld
Fi
x
0
.
5
grey background for ByteProcessors in
commit
|
commitdiff
|
tree
2009-09-24
Step
h
an
Saalfeld
Merge branch 'ma
s
ter'
o
f ssh
:
//repo
.
or
.
cz/s
r
v/
g
i
t/trakem2
commit
|
commitdiff
|
tree
2009-09-23
Stephan Saalfeld
Saving a lo
t
of
R
AM in visual
i
zi
n
g t
h
e lens distortio
n
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
han Saalf
e
l
d
M
erge branch '
s
tack'
i
nto align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Sa
a
lfeld
Hopefully fixed the scalin
g
in Stack
commit
|
commitdiff
|
tree
2009-09-17
Step
h
an Saalfeld
M
e
rge branch '
s
tack'
i
nt
o
al
i
gn
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
h
a
n Saalfeld
Merge
b
r
anch 'st
a
ck' of ssh://r
e
po
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
Merge branch 's
t
ack' into align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
separated
the
a
ctual alignLayersLinearly job from the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
S
t
ephan
S
aa
l
feld
Loader uses db_lock
commit
|
commitdiff
|
tree
2009-09-16
Stephan
Saalfeld
Me
r
ge branch 'align
'
of s
s
h:
/
/r
e
po
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
St
e
phan Saalf
e
ld
F
ixed a
bug th
a
t prevented
the m
u
l
t
i-layer mosaicking
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stepha
n
Saalfeld
Merge branch 'stack' of ssh
:
//
r
epo
.
or
.
c
z/srv/git/trake
m
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan Saalfeld
a
v
ery
intermediate co
m
mit that interrupts me at starting the
commit
|
commitdiff
|
tree
2009-09-11
Step
h
an
S
a
alfeld
decaching was
n
ot successful---truing another one
.
.
.
commit
|
commitdiff
|
tree
2009-09-11
Stepha
n
Saalfeld
Decache processed patches aft
e
r appli
c
ati
o
n
of
the C
T
.
commit
|
commitdiff
|
tree
2009-09-10
St
e
phan S
a
alfeld
Merg
e
bra
n
ch 'align' of ssh:
/
/re
p
o
.
or
.
cz/srv
/
git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
A
d
d
e
d a def
o
rm optio
n
to th
e
m
ulti-layer-mos
a
ic m
e
tho
d
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
Added a deform op
t
ion t
o
t
he
m
ulti-
l
a
y
er-mosaic
method
.
commit
|
commitdiff
|
tree
2009-09-10
Stepha
n
Saalfeld
Added
a convenience method to export a f
l
at image
for
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
St
e
phan Saa
l
feld
Co
s
metics (removed some
n
on-required impor
t
s a
n
d empt
y
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
S
tephan Saalfeld
A a
sta
t
i
c
meth
o
d to get the bou
n
din
g
bo
x
of a
collec
t
ion of
commit
|
commitdiff
|
tree
2009-09-02
S
tepha
n
S
a
alfeld
* Fixed wrong blurring
commit
|
commitdiff
|
tree
2009-09-01
Stephan Saalfeld
ictScale was
i
nver
s
e---an
y
way---there
a
re r
e
maining
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Stephan
Saalfeld
Ps
e
ud
o
-fix f
o
r lock
i
ng issu
e
s
commit
|
commitdiff
|
tree
2009-09-01
Stephan Saalfeld
Created the following ARG
B
compo
s
ite mode
s
for
t
wo
.
.
.
commit
|
commitdiff
|
tree
next