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Merge branch 'master' into elastic-align
2011-06-29
Stephan Saa
l
f
e
ld
Merg
e
branch
'
master' into elast
i
c-align
commit
|
commitdiff
|
tree
2011-06-28
S
tephan Saalfeld
Merg
e
branch
'
master' int
o
e
l
astic-ali
g
n
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfeld
Adde
d
`seems
-
to-work' elastic montaging
.
Missing parts are
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfe
l
d
* made Patch
.
PatchImage a static class (it ha
s
no referen
c
e
s
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Ste
p
han Saalfeld
adde
d
Pair to Abstract
commit
|
commitdiff
|
tree
2011-06-23
Stephan Sa
a
lfeld
A
l
i
g
n
.
java: moved
t
wice i
m
plemented Model fitting and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Stephan Sa
a
lfeld
El
a
sticAlign uses the loc
a
l s
i
ftParam
for identi
f
y
ing
commit
|
commitdiff
|
tree
2011-06-23
Step
h
an Saalfeld
Tran
s
formMe
s
hMappingWithMask rou
n
d
s
trian
g
e
l
boundi
n
g
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan Saalfeld
attempt
to get sha
r
e
d function
f
or layer alignment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan Saa
l
feld
t
itl
e
d m
o
n
tage dialog `Montage
'
consis
t
entl
y
with
t
he
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan S
a
alfeld
F
i
xed
T
hr
e
ad interrupt
i
on
in Align
.
connectTilePairs
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Step
h
an
S
aalfeld
`Mo
n
tage all images
i
n th
i
s l
a
y
e
r':
commit
|
commitdiff
|
tree
2011-06-17
S
t
ephan
Saalfe
l
d
Elastic
A
lign fixes:
commit
|
commitdiff
|
tree
2011-06-16
Stephan Saalfeld
M
e
rge branch 'master' into elastic-align
commit
|
commitdiff
|
tree
2011-06-16
Steph
a
n S
a
alfe
l
d
c
o
m
me
n
t
test r
p
int
commit
|
commitdiff
|
tree
2011-05-27
Step
h
a
n Saalfeld
st
a
rted with
E
lastic Alignment, layer alignment already
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Stephan
S
aal
f
e
ld
Merge branch 'master' into mpicb
g
-
m
o
del-
i
nterface
commit
|
commitdiff
|
tree
2010-11-20
Stephan S
a
alfeld
tr
a
ck
i
ng mp
i
cbg
m
odel-inter
f
ace
commit
|
commitdiff
|
tree
2010-08-18
Step
h
a
n Sa
a
lfeld
mpicbg
.
trakem2
.
transf
o
rm
.
Tran
s
formMesh extrapolates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
S
teph
a
n Sa
a
lfeld
Fixed bu
g
202
commit
|
commitdiff
|
tree
2010-08-16
St
e
phan Saalfeld
*
add minimal abso
l
ute number o
f
inliers as a para
m
e
t
er
commit
|
commitdiff
|
tree
2010-08-16
Stephan Sa
a
lfeld
M
erge
b
ranch '
m
aster' int
o
re
j
ectcon
s
t
a
ntbackground
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Merge branch 'mast
e
r
' of ss
h
://re
p
o
.
or
.
cz/s
r
v
/git/trakem2
commit
|
commitdiff
|
tree
2010-08-07
Stephan
Saalf
e
ld
Merge br
a
n
ch 'rejectconstantbackground' of ssh
:
//repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
S
tephan Saalfeld
finding co
n
nected tiles moved into base class
commit
|
commitdiff
|
tree
2010-08-07
Steph
a
n Saalfeld
use outl
i
er filter in optimizer
commit
|
commitdiff
|
tree
2010-08-07
St
e
phan Saalfel
d
finding c
o
nnected tiles mo
v
ed
i
nto base c
l
as
s
commit
|
commitdiff
|
tree
2010-08-06
Steph
a
n Saalfeld
Me
r
g
e
branch '
r
ejectc
o
nstantbackgr
o
und'
o
f
ssh://r
e
p
o
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
Stephan Saalfel
d
Fix wron
g
par
a
meter
cho
i
ce in
AlignTas
k
commit
|
commitdiff
|
tree
2010-08-05
Steph
a
n Saalfe
l
d
Mer
g
e branch 'master' i
n
to
r
ej
e
ctconstantbackg
r
ound
commit
|
commitdiff
|
tree
2010-08-05
St
e
pha
n
Saalf
e
ld
e
x
tende
d
verbosi
t
y o
f
the tile match
i
ng
commit
|
commitdiff
|
tree
2010-08-05
Steph
a
n Saal
f
e
ld
Added
a
filter
t
o r
e
j
e
ct consta
n
t background
p
atte
r
ns
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Step
h
a
n
Saalfeld
M
erge branch
'
m
aster
'
of ss
h
://repo
.
or
.
c
z
/srv/
g
it/trakem2
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Recovered the
m
o
st
i
mporta
t
n of Ign
a
cio's previous
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stepha
n
Sa
a
lfeld
Merge branch 'master' into le
n
s
-
mode
l
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Created PolynomialModel
2
D, a wrapper for Verena Ka
y
nig's
commit
|
commitdiff
|
tree
2010-03-18
Ste
p
han Saalfeld
Added
t
he max
i
ma
l
acc
e
p
t
ed fa
c
tor to mean Po
i
nt
M
atch
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
Stephan Saalfeld
R
e
m
o
v
e ma
t
ch
e
s with large displa
c
eme
n
t
from the config
u
ration
commit
|
commitdiff
|
tree
2010-02-23
S
t
eph
a
n
Saalfeld
fi
x
ed calibrati
o
n of scaled snapshots wh
e
n exporting
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Ste
p
ha
n
Saalfeld
fixed calibration of
scaled
s
napsho
t
s
commit
|
commitdiff
|
tree
2010-02-19
St
e
phan Saalfeld
Al
i
gnT
a
sk: when deforming, ti
l
es ARE already in p
l
ace
commit
|
commitdiff
|
tree
2010-02-19
Stepha
n
Saalfeld
AlignTa
s
k: Fi
x
ed missuse o
f
a stati
c
vari
a
b
le
.
commit
|
commitdiff
|
tree
2010-02-19
Stepha
n
Saalfeld
Remove th
e
ne
v
e
r
used shake method from abstract Model
.
commit
|
commitdiff
|
tree
2010-02-10
Step
h
an
Saa
l
feld
Fixed a bug tha
t
ma
d
e the o
r
iginal image
a
ppe
a
r
b
e
h
i
n
d
commit
|
commitdiff
|
tree
2010-02-09
Ste
p
h
a
n
S
aa
l
fel
d
Synchronized screen
P
atchRanges
commit
|
commitdiff
|
tree
2010-02-09
Stepha
n
S
aalfeld
minor cleanup in len
s
correction
commit
|
commitdiff
|
tree
2010-02-09
Stepha
n
Saalfeld
Add
e
d
T
ra
n
sfor
m
Me
s
hMapping
W
ithMasks for more efficient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
S
t
ephan Saalfel
d
NonLine
a
rTransfo
r
mMo
d
e can propagate t
h
e trans
f
ormation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
S
t
ephan S
a
alf
e
l
d
For now,
d
on't sc
a
le
max
E
psilon
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Saalfeld
Align Mu
l
ti-La
y
er-M
o
saic: Use up to 2x maxOctaveSize
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan
Saalf
e
ld
Finished
the d
e
f
orm opera
t
io
n
to consider
a
ll graphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
S
t
ephan
S
aa
l
feld
F
ixed
F
loat
.
M
I
N_VALUE t
o
F
loat
.
MAX_VAL
U
E
wher
e
i
t
remained
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfeld
a
l
ignMultiLa
y
e
rMosaic finally
uses graph-base
d
pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Steph
a
n Saalfeld
changed default value of SIFT
.
maxOctaveSize = 600
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfe
l
d
f
ixed pairOver
l
ap
p
ingT
i
les( Li
s
t, List, List[] )
commit
|
commitdiff
|
tree
2010-01-28
Steph
a
n Saalf
e
ld
a
dd
e
d
c
o
r
r
espo
n
denc
e
weight as
a
paramete
r
to Align
.
.
.
commit
|
commitdiff
|
tree
2009-11-05
Stephan Saa
l
feld
Merge
b
ranch 'maste
r
' into
b
unwarpj
commit
|
commitdiff
|
tree
2009-11-04
Stepha
n
Saalfeld
Mer
g
e branch 'master' into bunw
a
r
p
j
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saal
f
eld
F
ixed CompositeModes to work in the follow
i
ng confi
g
u
rations
commit
|
commitdiff
|
tree
2009-11-03
Stephan S
a
al
f
e
l
d
Revert
"Work arou
n
d annoy
i
ng bug in Grap
h
ics2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
S
t
e
phan Saalf
e
l
d
Fixed
C
ompos
i
teModes to
w
ork in the following
c
o
nf
i
g
uration
s
commit
|
commitdiff
|
tree
2009-11-03
Stephan
S
aalfeld
Sepa
r
ating AlignLayersT
a
sk
fr
o
m AlignTask
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan
Saal
f
eld
Revert "Work
around annoying bug in Graphics
2
D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Merge branch '
m
as
t
er'
into compos
i
te-modes
commit
|
commitdiff
|
tree
2009-11-03
S
t
e
phan Saalfeld
A
ddARGBCo
m
pos
i
te can handle image with
no alpha
.
commit
|
commitdiff
|
tree
2009-11-03
Step
h
an
Saa
l
f
e
ld
A
dded a
comment in
Align
commit
|
commitdiff
|
tree
2009-10-14
Stephan Saal
f
eld
refactored a misname
d
meth
o
d and statifi
e
d some par
a
meter
s
in
commit
|
commitdiff
|
tree
2009-10-14
Stephan Saalfeld
synchronized potentially concurre
n
cy
unsafe
match insertion
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
St
e
p
h
an
S
a
a
lfeld
Fi
x
ed the geometry issues
and added support for
a
ll
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
S
tephan
S
aalfe
l
d
C
atchin
g
and handling O
u
tOfMemory
E
rrors in Feat
u
re
E
xtract
i
on
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saa
l
feld
C
osmetics in AlignTas
k
and SimilarityModel2D
commit
|
commitdiff
|
tree
2009-10-08
Step
h
an
S
a
alf
e
ld
lenscorrecti
o
n sto
p
s now lat
e
r but la
t
e
s
t
a
fter the
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan S
a
alfeld
Merge bran
c
h 'mas
t
e
r
' of
s
s
h:/
/
r
epo
.
or
.
c
z
/srv/git/trakem2
commit
|
commitdiff
|
tree
2009-10-07
Ste
p
h
an Saalfe
l
d
Merge branch 'master' of
s
s
h://repo
.
or
.
cz/srv
/
git/trakem2
commit
|
commitdiff
|
tree
2009-10-07
S
t
ep
h
an
S
aalf
e
l
d
Fix 0
.
5grey b
a
ckgro
u
nd for ByteProcessors in
commit
|
commitdiff
|
tree
2009-09-24
Stephan Saalfeld
Merge
b
ranch '
m
aster' of ssh://r
e
po
.
or
.
cz/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2009-09-23
Stepha
n
Saa
l
feld
Sav
i
ng a lot of RAM in visualizin
g
the lens d
i
stort
i
on
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
S
tepha
n
S
a
alfeld
Merge bra
n
ch
's
t
ac
k
' i
n
to align
commit
|
commitdiff
|
tree
2009-09-17
St
e
phan Saal
f
e
l
d
Hopefully fixed the scal
i
n
g in Stack
commit
|
commitdiff
|
tree
2009-09-17
St
e
phan Saa
l
feld
Merge branch '
s
tack' into align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
M
e
rge branc
h
'
s
tack' of ssh://r
e
po
.
or
.
cz/srv/gi
t
/trakem
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
han Saalf
e
l
d
Merge branch 'stack' i
n
t
o
a
l
ign
commit
|
commitdiff
|
tree
2009-09-17
S
tep
h
an Saal
f
el
d
s
e
parated the actual alignLayer
s
Linea
r
ly job fr
o
m the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Step
h
an Saa
l
feld
L
oade
r
uses db_l
o
ck
commit
|
commitdiff
|
tree
2009-09-16
Step
h
an S
a
alfeld
Merge
branch
'align' of ssh:/
/
repo
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
Stephan Saalfeld
Fixed a bug that prevented the multi-la
y
e
r mosai
c
ki
n
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan
Saalfeld
Merge
b
ranch '
s
tack' of ssh://
r
epo
.
or
.
cz/srv/
g
it/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
S
tephan S
a
alfeld
a ver
y
intermedi
a
t
e
commit that
i
nterr
u
pts
me at starti
n
g th
e
commit
|
commitdiff
|
tree
2009-09-11
Stephan Saalfeld
decaching was not succes
s
f
ul-
-
-truing anoth
e
r one
.
.
.
commit
|
commitdiff
|
tree
2009-09-11
Stephan Saal
f
eld
Deca
c
he processed patch
e
s
after appli
c
a
tion of the CT
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saa
l
fel
d
Merg
e
br
a
nch 'align' of ssh://
r
epo
.
or
.
cz/s
r
v/g
i
t/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stepha
n
Saalfeld
Added a deform op
t
ion to the multi-lay
e
r-mo
s
aic
method
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan
S
a
a
lfeld
Added a deform option to the
m
ult
i
-
layer-mosai
c
method
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan
Sa
a
lfe
l
d
Added a
c
onvenien
c
e method to expor
t
a flat image for
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
S
tephan
Saalfeld
Cosmetics (
r
e
m
oved s
o
me
n
on-required imports
an
d
empty
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
A a st
a
tic met
h
od to
g
e
t t
h
e boundi
n
g b
o
x of a
c
ollec
t
i
on of
commit
|
commitdiff
|
tree
2009-09-02
Stepha
n
Saalfel
d
* Fixed w
r
ong blurr
i
ng
commit
|
commitdiff
|
tree
2009-09-01
S
teph
a
n Saalfeld
ictScale was inv
e
r
s
e---anyway---there are remai
n
i
n
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Step
h
an Saalfeld
Pseudo-fix for l
o
c
k
ing issues
commit
|
commitdiff
|
tree
2009-09-01
Steph
a
n Saal
f
eld
Cre
a
t
e
d the
f
ollo
w
i
n
g ARGB com
p
os
i
te modes for two
.
.
.
commit
|
commitdiff
|
tree
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