BGI/SOAPdenovo2/sparsePregraph/Makefile

   1 CC=            g++ # /opt/blc/gcc-4.5.0/bin/gcc #gcc
   2 ifdef debug
   3 CFLAGS=         -O0 -g -fomit-frame-pointer #-static #-mcrc32 -march=core2 -msse4.1 -msse4.2
   4 else
   5 CFLAGS=         -O4 -fomit-frame-pointer #-static #-mcrc32 -march=core2 -msse4.1 -msse4.2
   6 endif
   7
   8 DFLAGS=
   9 OBJS=           build_graph.o build_edge.o multi_threads.o \
  10                         build_preArc.o pregraph_sparse.o io_func.o\
  11                         global.o convert_soapdenovo.o
  12 PROG=
  13 INCLUDES=       -I./inc
  14 SUBDIRS=    .
  15 LIBPATH=        -L/usr/lib64
  16 LIBS=       -pthread -lz -L./inc
  17 EXTRA_FLAGS=
  18 VERSION =    1.0.3
  19
  20 ifdef 127mer
  21 CFLAGS += -D_127MER_
  22 PROG = pregraph_sparse_127mer.v$(VERSION)
  23
  24 else
  25 CFLAGS += -D_63MER_
  26 PROG = pregraph_sparse_63mer.v$(VERSION)
  27 endif
  28
  29
  30 BIT_ERR = 0
  31 ifeq (,$(findstring $(shell uname -m), x86_64 ppc64 ia64))
  32 BIT_ERR = 1
  33 endif
  34
  35 ifneq (,$(findstring Linux,$(shell uname)))
  36 EXTRA_FLAGS += -Wl,--hash-style=both
  37 LIBS += -lbam
  38 endif
  39
  40 ifneq (,$(findstring Unix,$(shell uname)))
  41 EXTRA_FLAGS += -Wl,--hash-style=both
  42 LIBS += -lbam -lrt
  43 endif
  44
  45 ifneq (,$(findstring Darwin,$(shell uname)))
  46 LIBS += -lbammac
  47 endif
  48
  49 ifneq (,$(findstring $(shell uname -m), x86_64))
  50 CFLAGS += -m64
  51 endif
  52
  53 ifneq (,$(findstring $(shell uname -m), ia64))
  54 CFLAGS +=
  55 endif
  56
  57 ifneq (,$(findstring $(shell uname -m), ppc64))
  58 CFLAGS += -mpowerpc64
  59 endif
  60
  61 .SUFFIXES:.cpp .o
  62
  63 .cpp.o:
  64                 @printf "Compiling $<...                             \r"; \
  65                 $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $< || echo "Error in command: $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $<"
  66
  67 all:            clean $(OBJS)
  68 #pregraph_sparse
  69
  70 .PHONY:all clean install
  71
  72 envTest:
  73                 @test $(BIT_ERR) != 1 || sh -c 'echo "Fatal: 64bit CPU and Operating System required!";false;'
  74
  75 pregraph_sparse: clean  envTest $(OBJS)
  76                 @printf "Linking...                                                       \r"
  77                 #@$(CC) $(CFLAGS)$(INCLUDES) -o $(PROG)  $(OBJS) $(LIBPATH) $(LIBS) $(ENTRAFLAGS)
  78                 @printf "$(PROG) compilation done.\n";
  79
  80 clean:
  81                 @rm -fr gmon.out *.o a.out *.exe *.dSYM $(PROG) *~ *.a *.so.* *.so *.dylib
  82                 @printf "$(PROG) cleaning done.\n";
  83
  84 install:
  85                 @cp $(PROG) ../bin/
  86                 @printf "$(PROG) installed at ../bin/$(PROG)\n"