R/FGI/rmd3/files/allele_freq.csv

   1 rsID,Number,Chr,Pos,A,C,G,T,sum,dbg\r
   2 rs10500915,SNP-1,chr11,21753388,0.2891,0.4467,0.2643,0,1.0001,"A,0.2891,C,0.4467,G,0.2643"\r
   3 rs10756250,SNP-2,chr9,11446771,0,0.5047,0,0.4953,1,"C,0.5047,T,0.4953,,"\r
   4 rs10991211,SNP-3,chr9,107075196,0.4988,0.5012,0,0,1,"A,0.4988,C,0.5012,,"\r
   5 rs11076452,SNP-4,chr16,51374733,0,0.5009,0,0.4991,1,"C,0.5009,T,0.4991,,"\r
   6 rs1159311,SNP-5,chr2,107209687,0.5006,0,0.4994,0,1,"A,0.5006,G,0.4994,,"\r
   7 rs11659227,SNP-6,chr18,23069326,0.4963,0,0,0.5037,1,"A,0.4963,T,0.5037,,"\r
   8 rs1241304,SNP-7,chr14,25869209,0.4014,0.4187,0.1799,0,1,"A,0.4014,C,0.4187,G,0.1799"\r
   9 rs12638242,SNP-8,chr3,59240496,0.5009,0.4991,0,0,1,"A,0.5009,C,0.4991,,"\r
  10 rs13090964,SNP-9,chr3,19818481,0.0757,0,0.5012,0.4231,1,"A,0.0757,G,0.5012,T,0.4231"\r
  11 rs13279486,SNP-10,chr8,40140397,0.2509,0.4677,0,0.2813,0.9999,"A,0.2509,C,0.4677,T,0.2813"\r
  12 rs1377902,SNP-11,chr4,32392102,0,0.1788,0.4025,0.4187,1,"C,0.1788,G,0.4025,T,0.4187"\r
  13 rs17684347,SNP-12,chr4,28401977,0.0416,0.4888,0.4696,0,1,"A,0.0416,C,0.4888,G,0.4696"\r
  14 rs1861718,SNP-13,chr12,127516420,0.2202,0.4798,0,0.2999,0.9999,"A,0.2202,C,0.4798,T,0.2999"\r
  15 rs1876456,SNP-14,chr6,98740230,0.3911,0,0.2534,0.3555,1,"A,0.3911,G,0.2534,T,0.3555"\r
  16 rs200162,SNP-15,chr1,230614110,0,0.5,0,0.5,1,"C,0.5,T,0.5,,"\r
  17 rs2022858,SNP-16,chr1,102608577,0.495,0,0.505,0,1,"A,0.495,G,0.505,,"\r
  18 rs2031420,SNP-17,chr13,22444015,0.371,0.348,0.281,0,1,"A,0.371,C,0.348,G,0.281"\r
  19 rs2057041,SNP-18,chr20,6921750,0.4358,0,0.4708,0.0934,1,"A,0.4358,G,0.4708,T,0.0934"\r
  20 rs2060337,SNP-19,chr15,70615407,0,0,0.5016,0.4984,1,"G,0.5016,T,0.4984,,"\r
  21 rs2216802,SNP-20,chr2,53548539,0.2153,0,0.4699,0.3148,1,"A,0.2153,G,0.4699,T,0.3148"\r
  22 rs2310738,SNP-21,chr5,105809541,0.3614,0,0.2453,0.3933,1,"A,0.3614,G,0.2453,T,0.3933"\r
  23 rs2386626,SNP-22,chr10,5721653,0.5043,0.4957,0,0,1,"A,0.5043,C,0.4957,,"\r
  24 rs2813838,SNP-23,chr7,24149292,0,0.5003,0.4997,0,1,"C,0.5003,G,0.4997,,"\r
  25 rs2826121,SNP-24,chr21,21644193,0,0,0.5016,0.4984,1,"G,0.5016,T,0.4984,,"\r
  26 rs2829433,SNP-25,chr21,26227481,0,0.3999,0.1094,0.4907,1,"C,0.3999,G,0.1094,T,0.4907"\r
  27 rs295886,SNP-26,chr17,35128715,0,0.5025,0,0.4975,1,"C,0.5025,T,0.4975,,"\r
  28 rs2963129,SNP-27,chr5,164208108,0.498,0.502,0,0,1,"A,0.498,C,0.502,,"\r
  29 rs308685,SNP-28,chr13,62677852,0.4888,0.4919,0,0.0192,0.9999,"A,0.4888,C,0.4919,T,0.0192"\r
  30 rs35200965,SNP-29,chr5,43951695,0.4957,0.5043,0,0,1,"A,0.4957,C,0.5043,,"\r
  31 rs35637306,SNP-30,chr19,32688419,0,0.4869,0.5131,0,1,"C,0.4869,G,0.5131,,"\r
  32 rs387543,SNP-31,chr16,62685501,0.1417,0.3834,0,0.4749,1,"A,0.1417,C,0.3834,T,0.4749"\r
  33 rs4073212,SNP-32,chr8,80265468,0,0.2716,0.325,0.4035,1.0001,"C,0.2716,G,0.325,T,0.4035"\r
  34 rs412467,SNP-33,chr5,73680093,0.4997,0,0.5003,0,1,"A,0.4997,G,0.5003,,"\r
  35 rs41446051,SNP-34,chr2,14046589,0.1856,0.3237,0.4907,0,1,"A,0.1856,C,0.3237,G,0.4907"\r
  36 rs438187,SNP-35,chr12,42075370,0.5016,0,0.4984,0,1,"A,0.5016,G,0.4984,,"\r
  37 rs4425603,SNP-36,chr6,156301976,0.393,0.4944,0,0.1126,1,"A,0.393,C,0.4944,T,0.1126"\r
  38 rs4620756,SNP-37,chr11,114901570,0.4972,0,0.3878,0.115,1,"A,0.4972,G,0.3878,T,0.115"\r
  39 rs4762175,SNP-38,chr12,97604246,0,0.3561,0.1576,0.4864,1.0001,"C,0.3561,G,0.1576,T,0.4864"\r
  40 rs4833043,SNP-39,chr4,38416416,0.4107,0.4237,0.1656,0,1,"A,0.4107,C,0.4237,G,0.1656"\r
  41 rs4881174,SNP-40,chr10,3502520,0.3037,0,0.2134,0.4829,1,"A,0.3037,G,0.2134,T,0.4829"\r
  42 rs4926703,SNP-41,chr1,56361223,0.4975,0,0.5025,0,1,"A,0.4975,G,0.5025,,"\r
  43 rs5769852,SNP-42,chr22,49448476,0,0.4888,0,0.5112,1,"C,0.4888,T,0.5112,,"\r
  44 rs6063600,SNP-43,chr20,49743736,0.5,0.5,0,0,1,"A,0.5,C,0.5,,"\r
  45 rs6455989,SNP-44,chr6,165475684,0,0.4988,0,0.5012,1,"C,0.4988,T,0.5012,,"\r
  46 rs6954149,SNP-45,chr7,153039799,0.4001,0.348,0.2519,0,1,"A,0.4001,C,0.348,G,0.2519"\r
  47 rs7157971,SNP-46,chr14,46384022,0,0.4125,0.3229,0.2646,1,"C,0.4125,G,0.3229,T,0.2646"\r
  48 rs72671448,SNP-47,chr14,29639302,0,0.5,0,0.5,1,"C,0.5,T,0.5,,"\r
  49 rs7928133,SNP-48,chr11,27843738,0.5006,0,0.4994,0,1,"A,0.5006,G,0.4994,,"\r
  50 rs7995018,SNP-49,chr13,112532803,0.2742,0.2435,0.4823,0,1,"A,0.2742,C,0.2435,G,0.4823"\r
  51 rs8027868,SNP-50,chr15,98879825,0.0478,0,0.4767,0.4755,1,"A,0.0478,G,0.4767,T,0.4755"\r
  52 rs8070506,SNP-51,chr17,51468026,0,0.4944,0,0.5056,1,"C,0.4944,T,0.5056,,"\r
  53 rs8105430,SNP-52,chr19,49905029,0,0.4693,0,0.5307,1,"C,0.4693,T,0.5307,,"\r
  54 rs897756,SNP-53,chr19,28799140,0,0.4718,0,0.5282,1,"C,0.4718,T,0.5282,,"\r
  55 rs9541254,SNP-54,chr13,35134562,0.5016,0,0,0.4984,1,"A,0.5016,T,0.4984,,"\r
  56 rs968975,SNP-55,chr8,58429851,0,0.2301,0.456,0.3139,1,"C,0.2301,G,0.456,T,0.3139"\r
  57 rs9917605,SNP-56,chr22,27732798,0,0.5003,0,0.4997,1,"C,0.5003,T,0.4997,,"\r
  58 rs9943694,SNP-57,chr12,84222209,0.3855,0.4119,0.2025,0,0.9999,"A,0.3855,C,0.4119,G,0.2025"\r