released/pIRS.old/pIRS_simulator/global.h

   1 #ifndef GLOBAL_H
   2 #define GLOBAL_H
   3
   4 using namespace std;
   5 using namespace boost;
   6
   7
   8 typedef struct{
   9   int Read_length;
  10   int Insertsize_mean;
  11   int Insertsize_sd;
  12   int Is_cyclization;
  13   int Is_simulate_GC_bias;
  14   int Is_simulate_quality;
  15   int Q_shift;
  16   int Output_type;
  17   double Coverage;
  18   double Error_rate;
  19         string Input_ref1;
  20   string Input_ref2;
  21   string BaseCalling_profile;
  22   string GC_depth_profile;
  23   string Output_prefix;
  24 }PARAMETER;
  25
  26 #endif