released/pIRS.old/pIRS_simulator/load_file.h

   1 #ifndef __LOADFILE_H_
   2 #define __LOADFILE_H_
   3
   4 #include "global.h"
   5
   6 using namespace std;
   7
   8 //check and open the outfile file
   9 void set_and_check_file(PARAMETER InputParameter, igzstream &infile, igzstream &infile2, ofstream &outfile1, ofstream &outfile2, ogzstream &gz_outfile1, ogzstream &gz_outfile2, ofstream &insert_log, ofstream &error_log);
  10
  11 //get the attribute of error profile
  12 void preview_BaseCalling_profile (PARAMETER InputParameter, string exe_path, int &ref_Base_num, int &statistical_Cycle_num, int &seq_Base_num, int &quality_num, double &statistical_average_error_rate);
  13
  14 //read in quality distribution file and get the quality distribution table.
  15 void load_BaseCalling_profile(PARAMETER InputParameter, string exe_path, int statistical_Cycle_num, int seq_Base_num, int quality_num, double statistical_average_error_rate, double*** simulation_matrix);
  16
  17 void load_GC_depth_profile (PARAMETER InputParameter, string exe_path, double* GC_bias_abundance);
  18
  19 #endif