BGI/soap_src/soap_builder/Makefile

   1 DEFINE =
   2 CC = gcc
   3 CMTIME =
   4 CFLAGS = -g -O0 -DCOMPILE_TIME=\""`date`"\"  #-funroll-loops -maccumulate-outgoing-args  -fomit-frame-pointer -msse3 -O3
   5
   6
   7 all:    2bwt-builder
   8
   9 BWT.o:  BWT.c BWT.h TypeNLimit.h MemManager.h TextConverter.h HSP.h MiscUtilities.h DNACount.h r250.h HSPstatistic.h makefile
  10 BWTConstruct.o: BWTConstruct.c BWTConstruct.h TypeNLimit.h BWT.h MemManager.h TextConverter.h HSP.h MiscUtilities.h DNACount.h QSufSort.h r250.h makefile
  11 2BWT-Builder.o:         2BWT-Builder.c BWTConstruct.h TypeNLimit.h BWT.h MemManager.h TextConverter.h HSP.h MiscUtilities.h DNACount.h iniparser.h dictionary.h BWTFormatdb.h Timing.h lookupBuilder.h highOccBuilder.h makefile
  12 SeqIO.o:        SeqIO.c SeqIO.h Types.h HSP.h makefile
  13 BWTSearch.o:    BWTSearch.c BWTSearch.h BWT.h MiscUtilities.h MemManager.h TextConverter.h HSP.h makefile
  14 karlin.o:       karlin.c karlin.h makefile
  15 extratools.o:   extratools.c extratools.h BWT.h MiscUtilities.h MemManager.h TextConverter.h HSP.h  Timing.h makefile
  16 lookupBuilder.o:        lookupBuilder.c lookupBuilder.h makefile
  17 highOccBuilder.o:       highOccBuilder.c highOccBuilder.h makefile
  18 DNACount.o:     DNACount.c DNACount.h TypeNLimit.h MiscUtilities.h makefile
  19 HSP.o:  HSP.c TextConverter.h TypeNLimit.h MemManager.h MiscUtilities.h r250.h HSP.h HSPstatistic.h makefile
  20 HSPstatistic.o: HSPstatistic.c karlin.h HSPstatistic.h makefile
  21 MemManager.o:   MemManager.c MiscUtilities.h TypeNLimit.h MemManager.h makefile
  22 MiscUtilities.o:        MiscUtilities.c MiscUtilities.h TypeNLimit.h makefile
  23 iniparser.o:    iniparser.c iniparser.h dictionary.h inistrlib.h makefile
  24 inistrlib.o:    inistrlib.c inistrlib.h makefile
  25 r250.o: r250.c r250.h makefile
  26 Socket.o:       Socket.c Socket.h TypeNLimit.h MemManager.h MiscUtilities.h makefile
  27 QSufSort.o:     QSufSort.c QSufSort.h TypeNLimit.h MiscUtilities.h makefile
  28 TextConverter.o:        TextConverter.c TextConverter.h TypeNLimit.h MemManager.h MiscUtilities.h r250.h makefile
  29 Timing.o:       Timing.c Timing.h makefile
  30
  31 2bwt-builder:   2BWT-Builder.o BWT.o BWTConstruct.o MiscUtilities.o MemManager.o TextConverter.o r250.o QSufSort.o iniparser.o inistrlib.o dictionary.o DNACount.o Timing.o Socket.o HSP.o HSPstatistic.o karlin.o lookupBuilder.o highOccBuilder.o makefile
  32         $(CC) $(CFLAGS) 2BWT-Builder.o BWT.o BWTConstruct.o MiscUtilities.o MemManager.o TextConverter.o r250.o QSufSort.o iniparser.o inistrlib.o dictionary.o DNACount.o HSP.o HSPstatistic.o karlin.o lookupBuilder.o highOccBuilder.o Timing.o Socket.o -o 2bwt-builder -lm
  33
  34 clean:
  35         rm -f *.o 2bwt-builder