c_cpp/etc/jellyfish/tests/parallel_direct_indexing.sh

   1 #! /bin/sh
   2
   3 cd tests
   4 . ./compat.sh
   5
   6 sort > ${pref}.md5sum <<EOF
   7 dcbb23c4a74a923c37a3b059f6a6d89a ${pref}_0
   8 8ac9533ccb34203fdac1f80b58774898 ${pref}.stats
   9 EOF
  10 echo "Counting 10-mers on ${nCPUs} CPU" && \
  11     $JF count --matrix seq10m_matrix_10 -m 10 -t $nCPUs \
  12     -o $pref -s 10000000 --timing ${pref}.timing \
  13     --stats ${pref}.stats seq10m.fa && \
  14     check ${pref}.md5sum
  15 RET=$?
  16
  17 cat ${pref}.timing
  18
  19 exit $RET