c_cpp/etc/jellyfish/tests/serial_direct_indexing.sh

   1 #! /bin/sh
   2
   3 cd tests
   4 . ./compat.sh
   5
   6 sort > ${pref}.md5sum <<EOF
   7 dcbb23c4a74a923c37a3b059f6a6d89a ${pref}_0
   8 EOF
   9 echo "Counting 10-mers on 1 CPU" && \
  10     $JF count --matrix seq10m_matrix_10 -m 10 -t 1 \
  11     -o $pref -s 10000000 --timing ${pref}.timing seq10m.fa && \
  12     check ${pref}.md5sum
  13 RET=$?
  14 cat ${pref}.timing
  15 # [ -z "$NODEL" ] && rm -f ${pref}_* ${pref}.timing ${pref}.md5sum
  16 exit $RET