etc/gatk-wdl/cnv_somatic_panel_workflow.b38.inputs.json

   1 {
   2   "CNVSomaticPanelWorkflow.normal_bams": ["/share/FGI2017B/users/huxs/nsfcG/wgs/cnv/WGS-Normal.hg38.bam"],
   3   "CNVSomaticPanelWorkflow.normal_bais": ["/share/FGI2017B/users/huxs/nsfcG/wgs/cnv/WGS-Normal.hg38.bai"],
   4   "CNVSomaticPanelWorkflow.pon_entity_id": "WGS-Normal",
   5
   6   "CNVSomaticPanelWorkflow.ref_fasta_dict": "/ldfssz1/FGI/CCS/huxuesong/nsfcG/hg38/Homo_sapiens_assembly38.dict",
   7   "CNVSomaticPanelWorkflow.ref_fasta": "/ldfssz1/FGI/CCS/huxuesong/nsfcG/hg38/Homo_sapiens_assembly38.fasta",
   8   "CNVSomaticPanelWorkflow.ref_fasta_fai": "/ldfssz1/FGI/CCS/huxuesong/nsfcG/hg38/Homo_sapiens_assembly38.fasta.fai",
   9   "CNVSomaticPanelWorkflow.intervals": "/ldfssz1/FGI/CCS/huxuesong/nsfcG/hg38/v0/wgs_evaluation_regions.hg38.interval_list",
  10
  11   "CNVSomaticPanelWorkflow.gatk_docker": "broadinstitute/gatk:4.1.4.0",
  12   "##CNVSomaticPanelWorkflow.gatk4_jar_override": "/share/FGI2017B/brew/Cellar/gatk/4.0.11.0/gatk-package-4.0.11.0-local.jar",
  13
  14   "CNVSomaticPanelWorkflow.preemptible_attempts": "3"
  15 }
  16