etc/gatk-wdl/fm2gatk/fm2.csv

   1 "sample","library","readgroup","R1","R2"
   2 TY1,LibTY1,V300076687_L01_473,"./fq/R100400180113/V300076687/L01/V300076687_L01_473-331_1.fq.gz","./fq/R100400180113/V300076687/L01/V300076687_L01_473-331_2.fq.gz"
   3 TY1,LibTY1,V300076687_L02_473,"./fq/R100400180113/V300076687/L02/V300076687_L02_473-331_1.fq.gz","./fq/R100400180113/V300076687/L02/V300076687_L02_473-331_2.fq.gz"
   4 TY2,LibTY2,V300076687_L01_379,"./fq/R100400180113/V300076687/L01/V300076687_L01_379-333_1.fq.gz","./fq/R100400180113/V300076687/L01/V300076687_L01_379-333_2.fq.gz"
   5 TY2,LibTY2,V300076687_L02_379,"./fq/R100400180113/V300076687/L02/V300076687_L02_379-333_1.fq.gz","./fq/R100400180113/V300076687/L02/V300076687_L02_379-333_2.fq.gz"
   6 TY3,LibTY31,V300076687_L01_380,"./fq/R100400180113/V300076687/L01/V300076687_L01_380-334_1.fq.gz","./fq/R100400180113/V300076687/L01/V300076687_L01_380-334_2.fq.gz"
   7 TY3,LibTY32,V300076687_L02_380,"./fq/R100400180113/V300076687/L02/V300076687_L02_380-334_1.fq.gz","./fq/R100400180113/V300076687/L02/V300076687_L02_380-334_2.fq.gz"
   8 TY4,LibTY41,V300076687_L01_383,"./fq/R100400180113/V300076687/L01/V300076687_L01_383-335_1.fq.gz","./fq/R100400180113/V300076687/L01/V300076687_L01_383-335_2.fq.gz"
   9 TY4,LibTY42,V300076687_L02_SR1,"./fq/R100400180113/V300076687/L02/V300076687_L02_383-335_1.fq.gz",""
  10 TY4,LibTY42,V300076687_L02_SR2,"./fq/R100400180113/V300076687/L02/V300076687_L02_383-335_2.fq.gz",""