perl/bsvf/test/simVir4_grep/ToGrep.ini

   1 [Output]
   2 ProjectID=simVir4
   3 WorkDir=./test
   4
   5 [Ref]
   6 chr14=107043718
   7 chr16=90338345
   8 chr12=133275309
   9 chr5=181538259
  10 chr8=145138636
  11 chr10=133797422
  12 chrY=57227415
  13 chr6=170805979
  14 chr17=83257441
  15 chr3=198295559
  16 RefChrIDs=chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY,chrM
  17 chrM=16569
  18 chr15=101991189
  19 Refilename=/share/users/huxs/work/bsvir/bsI/Ref/A5XBKg1ErlCK75YDYxJbT9s9xPI/GX.fa
  20 chr20=64444167
  21 chr21=46709983
  22 chr22=50818468
  23 chr19=58617616
  24 chr11=135086622
  25 chr4=190214555
  26 chr18=80373285
  27 chr1=248956422
  28 chr2=242193529
  29 gi|59585|emb|X04615.1|=3215
  30 chrX=156040895
  31 VirusChrIDs=gi|59585|emb|X04615.1|
  32 chr9=138394717
  33 chr13=114364328
  34 chr7=159345973
  35
  36 [InsertSizes]
  37 Fsimout_m9=200
  38 Fsimout_m13FG=200
  39 Fsimout_m6=150
  40 Fsimout_mB.SD=2
  41 Fsimout_m7C=150
  42 Fsimout_m9.SD=9
  43 Fsimout_mB=100
  44 Fsimout_m7C.SD=1
  45 Fsimout_m13FG.SD=1
  46 Fsimout_m458AE=420
  47 Fsimout_m458AE.SD=4
  48 Fsimout_m6.SD=6
  49 Fsimout_m2D.SD=2
  50 Fsimout_m2D=200
  51
  52 [BamFiles]
  53 Fsimout_m458AE=./test/simVir4_aln/Fsimout_m458AE.bam
  54 Fsimout_mB=./test/simVir4_aln/Fsimout_mB.bam
  55 Fsimout_m2D=./test/simVir4_aln/Fsimout_m2D.bam
  56 Fsimout_m9=./test/simVir4_aln/Fsimout_m9.bam
  57 Fsimout_m7C=./test/simVir4_aln/Fsimout_m7C.bam
  58 Fsimout_m6=./test/simVir4_aln/Fsimout_m6.bam
  59 Fsimout_m13FG=./test/simVir4_aln/Fsimout_m13FG.bam