BGI/BASE/src/contigs.h

   1 #ifndef __CONTIGS__H_
   2 #define __CONTIGS__H_
   3
   4 /*
   5
   6    contigs.h        assemble contigs in BASE.
   7
   8 #    Copyright (C) 2015, The University of Hong Kong.
   9 #
  10 #    This program is free software; you can redistribute it and/or
  11 #    modify it under the terms of the GNU General Public License
  12 #    as published by the Free Software Foundation; either version 3
  13 #    of the License, or (at your option) any later version.
  14 #
  15 #    This program is distributed in the hope that it will be useful,
  16 #    but WITHOUT ANY WARRANTY; without even the implied warranty of
  17 #    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  18 #    GNU General Public License for more details.
  19 #
  20 #    You should have received a copy of the GNU General Public License
  21 #    along with this program; if not, write to the Free Software
  22 #    Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  03110-1301, USA.
  23
  24     Date   : 28th Jan 2016
  25     Author : Binghang Liu, bhliu@cs.hku.hk
  26 */
  27
  28 #include "extend.h"
  29 #include <time.h>
  30 #include <math.h>
  31 #include "./2bwt/Timing.h"
  32 #include "./2bwt/TextConverter.h"
  33
  34 void contig_assembly(char* prefix, int method);
  35
  36 #endif
  37