c_cpp/coverages/chrtable.h

   1 #ifndef CHR_TABLE_H
   2 #define CHR_TABLE_H
   3 /*
   4 #include "uthash/uthash.h"
   5
   6 struct ChrData_hash_struct {
   7     char *ChrID;
   8     uint32_t ChrLen;
   9     uint8_t *Data;
  10     UT_hash_handle hh;
  11 };
  12
  13 struct ChrData_hash_struct *ChrData;
  14
  15 void add_chr(char *id, uint32_t len);
  16 */
  17 #include <stdlib.h>
  18 #include <string.h>
  19 #include <bam/sam.h>
  20
  21 struct myData {
  22     int32_t n_targets;
  23     char **target_name;
  24     uint32_t *target_len;
  25     uint8_t **ChrDat;
  26 } Data;
  27
  28 void do_stat(bam1_t *balignd, const uint16_t overlap, const struct myData *Data);
  29
  30 int do_contig(const uint8_t mindep, const struct myData *, const char * const outfile);
  31
  32 char *strlinker(const char * const main, const char * const suffix, char ** outstr);
  33
  34
  35
  36
  37
  38
  39
  40 #endif /* CHR_TABLE_H */