c_cpp/lib/htslib/htslib_vars.mk

   1 # Makefile variables useful for third-party code using htslib's public API.
   2 #
   3 #    Copyright (C) 2013-2017 Genome Research Ltd.
   4 #
   5 #    Author: John Marshall <jm18@sanger.ac.uk>
   6 #
   7 # Permission is hereby granted, free of charge, to any person obtaining a copy
   8 # of this software and associated documentation files (the "Software"), to deal
   9 # in the Software without restriction, including without limitation the rights
  10 # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
  11 # copies of the Software, and to permit persons to whom the Software is
  12 # furnished to do so, subject to the following conditions:
  13 #
  14 # The above copyright notice and this permission notice shall be included in
  15 # all copies or substantial portions of the Software.
  16 #
  17 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
  18 # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
  19 # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
  20 # THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
  21 # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
  22 # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
  23 # DEALINGS IN THE SOFTWARE.
  24
  25 # These variables can be used to express dependencies on htslib headers.
  26 # See htslib.mk for details.
  27
  28 htslib_bgzf_h = $(HTSPREFIX)htslib/bgzf.h $(htslib_hts_defs_h)
  29 htslib_cram_h = $(HTSPREFIX)htslib/cram.h $(htslib_hts_h)
  30 htslib_faidx_h = $(HTSPREFIX)htslib/faidx.h $(htslib_hts_defs_h)
  31 htslib_hfile_h = $(HTSPREFIX)htslib/hfile.h $(htslib_hts_defs_h)
  32 htslib_hts_h = $(HTSPREFIX)htslib/hts.h $(htslib_hts_defs_h) $(htslib_hts_log_h)
  33 htslib_hts_defs_h = $(HTSPREFIX)htslib/hts_defs.h
  34 htslib_hts_endian_h = $(HTSPREFIX)htslib/hts_endian.h
  35 htslib_hts_log_h = $(HTSPREFIX)htslib/hts_log.h
  36 htslib_kbitset_h = $(HTSPREFIX)htslib/kbitset.h
  37 htslib_kfunc_h = $(HTSPREFIX)htslib/kfunc.h
  38 htslib_khash_h = $(HTSPREFIX)htslib/khash.h
  39 htslib_khash_str2int_h = $(HTSPREFIX)htslib/khash_str2int.h $(htslib_khash_h)
  40 htslib_klist_h = $(HTSPREFIX)htslib/klist.h
  41 htslib_knetfile_h = $(HTSPREFIX)htslib/knetfile.h
  42 htslib_kseq_h = $(HTSPREFIX)htslib/kseq.h
  43 htslib_ksort_h = $(HTSPREFIX)htslib/ksort.h
  44 htslib_kstring_h = $(HTSPREFIX)htslib/kstring.h
  45 htslib_regidx_h = $(HTSPREFIX)htslib/regidx.h
  46 htslib_sam_h = $(HTSPREFIX)htslib/sam.h $(htslib_hts_h)
  47 htslib_synced_bcf_reader_h = $(HTSPREFIX)htslib/synced_bcf_reader.h $(htslib_hts_h) $(htslib_vcf_h) $(htslib_tbx_h)
  48 htslib_tbx_h = $(HTSPREFIX)htslib/tbx.h $(htslib_hts_h)
  49 htslib_thread_pool_h = $(HTSPREFIX)htslib/thread_pool.h
  50 htslib_vcf_h = $(HTSPREFIX)htslib/vcf.h $(htslib_hts_h) $(htslib_kstring_h) $(htslib_hts_defs_h) $(htslib_hts_endian_h)
  51 htslib_vcf_sweep_h = $(HTSPREFIX)htslib/vcf_sweep.h $(htslib_hts_h) $(htslib_vcf_h)
  52 htslib_vcfutils_h = $(HTSPREFIX)htslib/vcfutils.h $(htslib_vcf_h)