c_cpp/salusFstReCoord/src1/main.c

   1 #include <stdio.h>  // printf, fopen
   2
   3 #include "common.h"
   4
   5 #ifdef TARGET_OS_OSX
   6 #include <malloc/malloc.h>
   7 #endif
   8
   9 const char *argp_program_version = "fstBC transCorrd demo 0.1 @" __TIME__ "," __DATE__;
  10 const char *argp_program_bug_address = "huxs@salus-bio.com";
  11
  12 /* Program documentation. */
  13 static char doc[] =
  14     "fstBC transCorrd single threaded"
  15 #if defined(DEBUG)
  16     " (Debug Version)"
  17 #elif defined(NDEBUG)
  18     " (Release Version)"
  19 #else
  20     " (with assert)"
  21 #endif
  22     ;
  23
  24 /* Global Var for "common.h" */
  25 parameters_t Parameters = {
  26     .fqSkipped = 0,
  27     .fqValid = 0,
  28 };
  29 // static_assert(VARTYPE(Parameters.jobDataState)==1, "It is not uint8_t");
  30 workerArray_t *workerArray;
  31
  32 int main(int argc, char *argv[]) {
  33         if (argc != 3) {
  34                 fprintf(stderr, "====== %s ======\n[i]Usage: %s <fstBC.fq[.gz]> <spatial.txt>\n", doc, argv[0]);
  35                 return 2;
  36         }
  37         printf("[i]%s %s %s\n", argv[0], argv[1], argv[2]);
  38         Parameters.inFastqFilename = argv[1];
  39         // 没printf拖时间就得加 barrier
  40         Parameters.outSpatialFilename = argv[2];
  41         errno = 0; /* extern int, but do not declare errno manually */
  42         Parameters.outfp = fopen(Parameters.outSpatialFilename, "w");
  43         if (errno != 0) {
  44                 fprintf(stderr, "[x]Error on opening output file [%s]: %s.\n", Parameters.outSpatialFilename, strerror(errno));
  45                 exit(EXIT_FAILURE);
  46         }
  47         // defLoop_p = uv_default_loop();
  48
  49         int_least16_t n_threads = 1;
  50         workerArray_t *workerArray = (workerArray_t *)calloc(n_threads, sizeof(workerArray_t));
  51
  52 #ifndef RELEASE
  53 #if __has_builtin(__builtin_dump_struct)
  54 #pragma GCC diagnostic push
  55 #pragma GCC diagnostic ignored "-Wformat-pedantic"
  56         __builtin_dump_struct(&Parameters, &printf);
  57 #pragma GCC diagnostic pop
  58 #endif
  59 #endif
  60
  61         free(workerArray);
  62         fclose(Parameters.outfp);
  63         fprintf(stderr, "[i]Run to the end.\n");
  64         return 0;
  65 }