c_cpp/faststater/Makefile

   1 #CC = gcc
   2 CFLAGS = -Wall -pipe -march=core2 -mtune=generic
   3 LDFLAGS = -lz -lm
   4 OPT = -O3
   5
   6 UNAME_S := $(shell uname -s)
   7 ifeq ($(UNAME_S),Darwin)
   8         CC=gcc-8
   9         CFLAGS += -I/usr/local/include
  10         LDFLAGS += -L/usr/local/lib -largp
  11 endif
  12
  13 OBJDIR = ./objects/
  14
  15 MAKEARG = $(CFLAGS) $(OPT)
  16
  17 cobjects =
  18 c99objects = ./objects/gFileIO.o
  19 mainobjects = ./objects/fcount.o ./objects/gcount.o
  20 objects = $(cobjects) $(c99objects)
  21 exefiles = readsCounter homopolymerCounter
  22
  23 all: clean $(objects) $(exefiles)
  24
  25 readsCounter: $(objects) $(mainobjects)
  26         $(CC) $(CFLAGS) $(OPT) $(LDFLAGS) -o readsCounter $(objects) ./objects/fcount.o
  27 homopolymerCounter: $(objects) $(mainobjects)
  28         $(CC) $(CFLAGS) $(OPT) $(LDFLAGS) -o homopolymerCounter $(objects) ./objects/gcount.o
  29
  30 $(cobjects): $(OBJDIR)%.o: %.c
  31         $(CC) $(MAKEARG) -c $< -o $@
  32
  33 $(c99objects) $(mainobjects): $(OBJDIR)%.o: %.c
  34         $(CC) -std=gnu99 $(MAKEARG) -c $< -o $@
  35
  36 debug: override MAKEARG := $(CFLAGS) -O -D DEBUG -g
  37 debug: all
  38
  39 .PHONY : clean
  40 clean:
  41         -rm $(exefiles) $(mainobjects) $(objects)
  42         @mkdir -p $(OBJDIR)
  43