c_cpp/readscorr/Makefile

   1 CC = gcc
   2 #CPP = g++
   3 CFLAGS = -Wall -pipe -march=core2 -mtune=generic -pedantic -Wfloat-equal\
   4 # -Wno-packed-bitfield-compat\
   5 # -Wpadded -Wextra
   6 # -DMKL_ILP64 -m64 -I$(MKLROOT)/include \
   7 # -ftree-vectorize -ftree-vectorizer-verbose=5
   8 LDFLAGS = -lz -lm -Wl,-O1 -Wl,--as-needed -Wl,--sort-common -Wl,--enable-new-dtags -Wl,--hash-style=both \
   9 # $(MKLROOT)/lib/em64t/libmkl_solver_ilp64_sequential.a -Wl,--start-group $(MKLROOT)/lib/em64t/libmkl_intel_ilp64.a $(MKLROOT)/lib/em64t/libmkl_sequential.a $(MKLROOT)/lib/em64t/libmkl_core.a -Wl,--end-group -lpthread
  10 OPT = -O3
  11 ASMO = -Wa,-a,-ad
  12
  13 OBJDIR = ./objects/
  14
  15 DEF = #-D NEW
  16
  17 MAKEARG = $(CFLAGS) $(DEF) $(OPT) $(ASMO)
  18
  19 # OpenMP
  20 ifdef OPENMP
  21 override CFLAGS := $(CFLAGS) -fopenmp
  22 override DEF := $(DEF) -D OPENMP
  23 endif
  24
  25 # pthread
  26 ifdef PTHREAD
  27 override LDFLAGS := $(LDFLAGS) -lpthread
  28 override DEF := $(DEF) -D PTHREAD
  29 endif
  30
  31 cobjects =
  32 customobjects = $(addprefix $(OBJDIR),)# sdleftTFuint16.o sdleftTFuint32.o sdleftTFuint64.o sdleftTFpublic.o )
  33 c99objects = $(addprefix $(OBJDIR), MurmurHash3.o gFileIO.o 2bitseq.o cfgparser.o gtools.o sdleft.o)
  34 mainobjects = $(addprefix $(OBJDIR), main.o tester.o fcount.o gcount.o )
  35 objects = $(cobjects) $(c99objects) $(customobjects)
  36 exefiles = readscorr tester fcount gcount
  37
  38 all: clean $(objects) $(exefiles)
  39         @echo [$(CC) $(CFLAGS) $(OPT) $(LDFLAGS)][$(MAKEARG)].
  40
  41 readscorr: $(objects) $(mainobjects)
  42         @$(CC) $(CFLAGS) $(OPT) $(LDFLAGS) -o readscorr $(objects) $(addprefix $(OBJDIR), main.o)
  43 tester: $(objects) $(mainobjects)
  44         @$(CC) $(CFLAGS) $(OPT) $(LDFLAGS) -o tester $(objects) $(addprefix $(OBJDIR), tester.o)
  45 fcount: $(objects) $(mainobjects)
  46         @$(CC) $(CFLAGS) $(OPT) $(LDFLAGS) -o fcount $(objects) $(addprefix $(OBJDIR), fcount.o)
  47 gcount: $(objects) $(mainobjects)
  48         @$(CC) $(CFLAGS) $(OPT) $(LDFLAGS) -o gcount $(objects) $(addprefix $(OBJDIR), gcount.o)
  49
  50 #$(OBJDIR)sdleftTFuint16.o:
  51 #       $(CC) -std=gnu99 $(MAKEARG) -D USEUINT16 -c sdleftTF.c -o $@ > $(@:.o=.asm)
  52 #$(OBJDIR)sdleftTFuint32.o:
  53 #       $(CC) -std=gnu99 $(MAKEARG) -D USEUINT32 -c sdleftTF.c -o $@ > $(@:.o=.asm)
  54 #$(OBJDIR)sdleftTFuint64.o:
  55 #       $(CC) -std=gnu99 $(MAKEARG) -D USEUINT64 -c sdleftTF.c -o $@ > $(@:.o=.asm)
  56 #$(OBJDIR)sdleftTFpublic.o:
  57 #       $(CC) -std=gnu99 $(MAKEARG) -D PUBLIC -c sdleftTF.c -o $@ > $(@:.o=.asm)
  58
  59 $(cobjects): $(OBJDIR)%.o: %.c
  60         @$(CC) $(MAKEARG) -c $< -o $@ > $(@:.o=.asm)
  61 #$(cppobjects): %.o: %.cpp
  62 #       $(CPP) $(MAKEARG) -c $< -o $@ > $@.asm
  63 $(c99objects) $(mainobjects): $(OBJDIR)%.o: %.c
  64         @$(CC) -std=gnu99 $(MAKEARG) -c $< -o $@ > $(@:.o=.asm)
  65
  66 debug: override MAKEARG := $(CFLAGS) $(DEF) -O -D DEBUG -g $(ASMO)
  67 debug: all
  68
  69 alpha: override MAKEARG := $(CFLAGS) $(DEF) $(OPT) $(ASMO) -D TEST
  70 alpha: all
  71
  72 alphadbg: override MAKEARG := $(CFLAGS) $(DEF) $(OPT) $(ASMO) -D TEST -D DEBUG -g
  73 alphadbg: all
  74
  75 alphapf: override MAKEARG := $(CFLAGS) $(DEF) $(OPT) $(ASMO) -D TEST -pg -g
  76 alphapf: override LDFLAGS += -pg
  77 alphapf: gprofmain
  78
  79 gprofmain: clean readscorr
  80         ./readscorr -o gprof test.lst 2> gprof.log
  81         gprof -l readscorr > gprof.report
  82
  83 test: readscorr
  84         valgrind --leak-check=yes ./readscorr test.lst -k 17
  85
  86 .PHONY : clean
  87 clean:
  88         -rm $(exefiles) $(mainobjects) $(objects)
  89         @mkdir -p $(OBJDIR)
  90