BGI/SOAPdenovo2/Makefile

   1 CC = g++
   2 ifdef debug
   3 CFLAGS=         -O0 -g -fomit-frame-pointer
   4 else
   5 CFLAGS=         -O4 -fomit-frame-pointer
   6 endif
   7
   8 SUBDIRS = sparsePregraph standardPregraph
   9 PROG=       SOAPdenovo-63mer SOAPdenovo-127mer
  10 INCLUDES=   -I./sparsePregraph/inc -I./standardPregraph/inc
  11
  12 LIBPATH=    -L/lib64 -L/usr/lib64 -L./sparsePregraph/inc -L./standardPregraph/inc
  13 LIBS=       -pthread -lz -lm
  14 EXTRA_FLAGS=
  15
  16 BIT_ERR = 0
  17 ifeq (,$(findstring $(shell uname -m), x86_64 ppc64 ia64))
  18 BIT_ERR = 1
  19 endif
  20
  21 ifneq (,$(findstring Linux,$(shell uname)))
  22 EXTRA_FLAGS += -Wl,--hash-style=both
  23 LIBS += -lbam -lrt
  24 endif
  25
  26 ifneq (,$(findstring Unix,$(shell uname)))
  27 EXTRA_FLAGS += -Wl,--hash-style=both
  28 LIBS += -lbam -lrt
  29 endif
  30
  31 ifneq (,$(findstring Darwin,$(shell uname)))
  32 LIBS += -lbammac
  33 endif
  34
  35 ifneq (,$(findstring $(shell uname -m), x86_64))
  36 CFLAGS += -m64
  37 endif
  38
  39 ifneq (,$(findstring $(shell uname -m), ia64))
  40 CFLAGS +=
  41 endif
  42
  43 ifneq (,$(findstring $(shell uname -m), ppc64))
  44 CFLAGS += -mpowerpc64
  45 endif
  46
  47
  48 all: SOAPdenovo-63mer SOAPdenovo-127mer
  49
  50 ifdef debug
  51 SOAPdenovo-63mer:
  52         @cd sparsePregraph;make 63mer=1 debug=1;cd ..;
  53         @cd standardPregraph;make 63mer=1 debug=1;cd ..;
  54         @$(CC) sparsePregraph/*.o standardPregraph/*.o $(LIBPATH) $(LIBS) $(EXTRA_FLAGS) -o SOAPdenovo-63mer
  55 SOAPdenovo-127mer:
  56         @cd sparsePregraph;make 127mer=1 debug=1;cd ..;
  57         @cd standardPregraph;make 127mer=1 debug=1;cd ..;
  58         @$(CC) sparsePregraph/*.o standardPregraph/*.o $(LIBPATH) $(LIBS) $(EXTRA_FLAGS) -o SOAPdenovo-127mer
  59 clean:
  60         @cd sparsePregraph;make clean;cd ..;
  61         @cd standardPregraph;make clean;cd ..;
  62         @rm SOAPdenovo-63mer SOAPdenovo-127mer -f
  63 else
  64 SOAPdenovo-63mer:
  65         @cd sparsePregraph;make 63mer=1;cd ..;
  66         @cd standardPregraph;make 63mer=1;cd ..;
  67         @$(CC) sparsePregraph/*.o standardPregraph/*.o $(LIBPATH) $(LIBS) $(EXTRA_FLAGS) -o SOAPdenovo-63mer
  68 SOAPdenovo-127mer:
  69         @cd sparsePregraph;make 127mer=1;cd ..;
  70         @cd standardPregraph;make 127mer=1;cd ..;
  71         @$(CC) sparsePregraph/*.o standardPregraph/*.o $(LIBPATH) $(LIBS) $(EXTRA_FLAGS) -o SOAPdenovo-127mer
  72 clean:
  73         @cd sparsePregraph;make clean;cd ..;
  74         @cd standardPregraph;make clean;cd ..;
  75         @rm SOAPdenovo-63mer SOAPdenovo-127mer -f
  76 endif