c_cpp/faststater/2bitseq.h

   1 #ifndef _G_DBSEQ_H
   2 #define _G_DBSEQ_H
   3
   4 #include <stdint.h>     // int_fast8_t
   5 #include <stdlib.h> // malloc
   6 #include "2bitseqinline.h"
   7
   8 #ifndef DBIT2BASES
   9 #define DBIT2BASES
  10 #define DBIT2BASE(dbit) ("ACGT"[dbit])
  11 #define DBIT2COMPBASE(dbit) ("TGCA"[dbit])
  12 #endif
  13
  14 char *unit2basechr(uint64_t);
  15 char *dib2basechr(uint64_t *, size_t);
  16
  17 uint64_t *dibrevcomp(uint64_t const *const, size_t);
  18 //uint64_t *dibmalloc(size_t len);
  19
  20 #endif  // 2bitseq.h
  21