released/pIRS.old/stat_illumina_reads/gcvgstater/Makefile

   1 OBJ = gzstream.o self_util.o main.o stat_soap_coverage.o
   2 CC = g++
   3 LIBRARY = -O3 -lz -pipe -march=core2 -mtune=generic -pedantic -Wfloat-equal \
   4 -Wall -std=c++0x
   5
   6 gc_coverage_bias:${OBJ}
   7         ${CC} -o gc_coverage_bias ${LIBRARY} ${OBJ}
   8 gzstream.o:gzstream.h gzstream.cpp
   9         ${CC} -c ${LIBRARY} gzstream.h gzstream.cpp -static
  10 self_util.o:self_util.cpp self_util.h
  11         ${CC} -c ${LIBRARY} self_util.cpp self_util.h -static
  12 main.o:main.cpp
  13         ${CC} -c ${LIBRARY} main.cpp -static
  14 stat_soap_coverage.o:stat_soap_coverage.h stat_soap_coverage.cpp
  15         ${CC} -c ${LIBRARY} stat_soap_coverage.h stat_soap_coverage.cpp -static
  16 test: gc_coverage_bias
  17         ./gc_coverage_bias -r gcdeptestref.fa.gz -o test -w 100,200 --gcdump --depwindump gcdeptest.depth.gz
  18         -./gc_coverage_bias_plot test_100.dat
  19         -./gc_coverage_bias_plot test_200.dat
  20         ls -l test*
  21 testclean:
  22         -rm -v test_*
  23 clean:
  24         -rm -v ${OBJ} *.gch
  25