c_cpp/salusFstReCoord/src1/output.c

   1 #include "common.h"
   2
   3 void output_worker(int_least16_t worker_id) {
   4         workerArray_t *worker = &Parameters.worksQuene[worker_id];
   5         regmatch_t matches[2];
   6         char **splitSets = worker->tokens;
   7 #ifndef RELEASE
   8         char readName[MAXFQIDLEN + 1] = {0};
   9         char readSeq[BARCODELEN + 1] = {0};
  10         char readQual[BARCODELEN + 1] = {0};
  11         char readRowCol[ROWCOLSIZE + 1] = {0};
  12 #endif
  13         for (uint64_t index = 0; index < JOBITEMSIZE; index++) {
  14                 fstBCdata_t *fstBCdata_p = &worker->jobDatArray[index];
  15                 if (fstBCdata_p->name[0] == 0) {
  16                         break;
  17                 }
  18 #ifndef RELEASE
  19                 ARRAYcpySTR(readName, fstBCdata_p->name);
  20                 assert(readName[sizeof(fstBCdata_p->name)] == '\0');
  21                 fprintf(stderr, "  ID:[%s]\n", readName);
  22                 ARRAYcpySTR(readSeq, fstBCdata_p->seq);
  23                 assert(readSeq[sizeof(fstBCdata_p->seq)] == '\0');
  24                 fprintf(stderr, " Seq:[%s]\n", readSeq);
  25                 ARRAYcpySTR(readQual, fstBCdata_p->qual);
  26                 assert(readQual[sizeof(fstBCdata_p->qual)] == '\0');
  27                 fprintf(stderr, "Qual:[%s]\n", readQual);
  28                 ARRAYcpySTR(readRowCol, fstBCdata_p->RowCol);
  29                 assert(readRowCol[sizeof(fstBCdata_p->RowCol)] == '\0');
  30                 fprintf(stderr, "RoCo:[%s]\t", readRowCol);
  31                 fprintf(stderr, "XY:[%.2f],[%.2f]\n\n", fstBCdata_p->newXY[0], fstBCdata_p->newXY[1]);
  32 #endif
  33                 fprintf(stdout, "@%.*s %.2f %.2f\t%.*s\n" "%.*s\n+\n%.*s\n",
  34                         sizeof(fstBCdata_p->name), fstBCdata_p->name,
  35                         fstBCdata_p->newXY[0], fstBCdata_p->newXY[1],
  36                         sizeof(fstBCdata_p->RowCol), fstBCdata_p->RowCol,
  37                         sizeof(fstBCdata_p->seq), fstBCdata_p->seq,
  38                         sizeof(fstBCdata_p->qual), fstBCdata_p->qual
  39                 );
  40                 fflush(stdout);
  41         }
  42 }