etc/gatk-wdl/fm2/fm2.samples.json

   1 {
   2     "samples": [
   3         {
   4             "readgroups": [
   5                 {
   6                     "id": "V300076687_L01_473",
   7                     "R1": "./fq/R100400180113/V300076687/L01/V300076687_L01_473-331_1.fq.gz",
   8                     "R2": "./fq/R100400180113/V300076687/L01/V300076687_L01_473-331_2.fq.gz",
   9                     "lib_id": "LibTY1"
  10                 },
  11                 {
  12                     "id": "V300076687_L02_473",
  13                     "R1": "./fq/R100400180113/V300076687/L02/V300076687_L02_473-331_1.fq.gz",
  14                     "R2": "./fq/R100400180113/V300076687/L02/V300076687_L02_473-331_2.fq.gz",
  15                     "lib_id": "LibTY1"
  16                 }
  17             ],
  18             "id": "TY1"
  19         },
  20         {
  21             "readgroups": [
  22                 {
  23                     "id": "V300076687_L01_379",
  24                     "R1": "./fq/R100400180113/V300076687/L01/V300076687_L01_379-333_1.fq.gz",
  25                     "R2": "./fq/R100400180113/V300076687/L01/V300076687_L01_379-333_2.fq.gz",
  26                     "lib_id": "LibTY2"
  27                 },
  28                 {
  29                     "id": "V300076687_L02_379",
  30                     "R1": "./fq/R100400180113/V300076687/L02/V300076687_L02_379-333_1.fq.gz",
  31                     "R2": "./fq/R100400180113/V300076687/L02/V300076687_L02_379-333_2.fq.gz",
  32                     "lib_id": "LibTY2"
  33                 }
  34             ],
  35             "id": "TY2"
  36         },
  37         {
  38             "readgroups": [
  39                 {
  40                     "id": "V300076687_L01_380",
  41                     "R1": "./fq/R100400180113/V300076687/L01/V300076687_L01_380-334_1.fq.gz",
  42                     "R2": "./fq/R100400180113/V300076687/L01/V300076687_L01_380-334_2.fq.gz",
  43                     "lib_id": "LibTY31"
  44                 },
  45                 {
  46                     "id": "V300076687_L02_380",
  47                     "R1": "./fq/R100400180113/V300076687/L02/V300076687_L02_380-334_1.fq.gz",
  48                     "R2": "./fq/R100400180113/V300076687/L02/V300076687_L02_380-334_2.fq.gz",
  49                     "lib_id": "LibTY32"
  50                 }
  51             ],
  52             "id": "TY3"
  53         },
  54         {
  55             "readgroups": [
  56                 {
  57                     "id": "V300076687_L01_383",
  58                     "R1": "./fq/R100400180113/V300076687/L01/V300076687_L01_383-335_1.fq.gz",
  59                     "R2": "./fq/R100400180113/V300076687/L01/V300076687_L01_383-335_2.fq.gz",
  60                     "lib_id": "LibTY41"
  61                 },
  62                 {
  63                     "id": "V300076687_L02_SR1",
  64                     "R1": "./fq/R100400180113/V300076687/L02/V300076687_L02_383-335_1.fq.gz",
  65                     "lib_id": "LibTY42"
  66                 },
  67                 {
  68                     "id": "V300076687_L02_SR2",
  69                     "R1": "./fq/R100400180113/V300076687/L02/V300076687_L02_383-335_2.fq.gz",
  70                     "lib_id": "LibTY42"
  71                 }
  72             ],
  73             "id": "TY4"
  74         }
  75     ]
  76 }