| blob | bd689870c1028bc876ad66182b285dedc13003ec |
1 chr pos_start pos_end shared_num/methy_in_normal/methy_in_tumor/pos_num tumor_methy_num/tumor_NONE_methy_num tumor_methy_ratio normal_methy_num/normal_NONE_methy_num normal_methy_ratio chisq.test_p-value t.test_p-value PlotColor
2 chr1 1549762 1549885 0/1/4/5 5/5 0.50 0/60 0.00 1.32e-08 1.62e-12 green2
3 chr1 1549762 1549885 0/1/4/5 5/5 0.50 0/60 0.00 1.32e-08 1.62e-12 green2
4 chr1 6614658 6614910 1/5/1/5 7/56 0.11 11/4 0.73 2.74e-07 9.01e-03 green2
5 chr1 6614658 6614910 1/5/1/5 7/56 0.11 11/4 0.73 2.74e-07 9.01e-03 green2
6 chr1 6614658 6614910 1/5/1/5 7/56 0.11 11/4 0.73 2.74e-07 9.01e-03 green2
7 chr1 11322993 11323253 2/6/2/6 17/129 0.12 29/8 0.78 6.37e-17 2.01e-02 green2
8 chr1 16959181 16959330 1/1/5/5 11/5 0.69 105/2 0.98 2.23e-06 9.63e-04 green2
9 chr1 16971371 16971460 1/5/1/5 5/83 0.06 6/10 0.38 1.41e-04 9.98e-03 green2
10 chr1 17091678 17091946 5/6/5/6 168/5 0.97 144/22 0.87 4.27e-04 9.12e-03 green2
11 chr1 24017441 24017576 2/4/3/5 69/12 0.85 67/0 1.00 1.01e-03 8.59e-03 green2
12 chr1 32536850 32537107 1/8/1/8 107/1 0.99 10/3 0.77 2.44e-05 4.59e-06 green2
13 chr1 33115484 33115554 2/2/6/6 13/17 0.43 17/97 0.15 6.48e-04 3.85e-02 green2
14 chr1 33115484 33115554 2/2/6/6 13/17 0.43 17/97 0.15 6.48e-04 3.85e-02 green2
15 chr1 65730384 65730506 4/5/7/8 15/72 0.17 2/104 0.02 1.80e-04 1.44e-05 green2
16 chr1 78244471 78244831 3/5/3/5 69/12 0.85 58/0 1.00 2.16e-03 2.41e-02 green2
17 chr1 108508550 108508782 0/4/1/5 0/53 0.00 2/12 0.14 5.21e-03 1.62e-12 green2
18 chr1 109419118 109419508 0/3/6/9 31/11 0.74 0/91 0.00 8.09e-21 4.28e-07 green2
19 chr1 110525848 110526158 1/5/1/5 77/22 0.78 6/14 0.30 2.21e-05 4.45e-02 green2
20 chr1 111772086 111772131 4/5/4/5 63/24 0.72 40/3 0.93 6.42e-03 8.09e-04 green2
21 chr1 146697437 146697547 5/6/5/6 7/94 0.07 17/56 0.23 2.02e-03 2.27e-03 green2
22 chr1 204041556 204041598 1/5/1/5 69/25 0.73 0/15 0.00 4.31e-08 1.66e-02 green2
23 chr1 227915540 227915676 1/4/3/6 60/10 0.86 16/19 0.46 1.55e-05 1.78e-03 green2
24 chr1 246951747 246952075 0/7/1/8 127/4 0.97 7/5 0.58 1.35e-07 8.21e-06 green2
25 chr2 26206050 26206159 2/5/2/5 137/13 0.91 20/7 0.74 9.11e-03 3.57e-02 green2
26 chr2 26394943 26395117 2/7/3/8 60/28 0.68 13/20 0.39 3.94e-03 1.17e-02 green2
27 chr2 43824233 43824278 0/4/1/5 49/2 0.96 8/3 0.73 9.89e-03 9.02e-03 green2
28 chr2 43824233 43824278 0/4/1/5 49/2 0.96 8/3 0.73 9.89e-03 9.02e-03 green2
29 chr2 44395459 44395548 0/4/1/5 0/52 0.00 2/14 0.12 9.66e-03 1.62e-12 green2
30 chr2 47144079 47144428 0/5/1/6 71/8 0.90 3/10 0.23 1.85e-08 3.74e-03 green2
31 chr2 47144079 47144428 0/5/1/6 71/8 0.90 3/10 0.23 1.85e-08 3.74e-03 green2
32 chr2 47799120 47799353 0/1/4/5 3/8 0.27 1/49 0.02 2.17e-03 6.20e-03 green2
33 chr2 70140943 70141240 4/9/6/11 49/87 0.36 68/10 0.87 4.68e-13 3.85e-03 green2
34 chr2 70521203 70521516 0/1/5/6 2/13 0.13 0/81 0.00 8.97e-04 0.00e+00 green2
35 chr2 74735533 74735607 1/3/3/5 28/4 0.88 11/21 0.34 1.33e-05 3.97e-03 green2
36 chr2 85830800 85831007 0/4/3/7 11/47 0.19 30/7 0.81 2.51e-09 4.91e-04 green2
37 chr2 87303970 87304015 1/1/5/5 4/9 0.31 0/82 0.00 2.86e-07 0.00e+00 green2
38 chr2 88927716 88928017 0/4/1/5 0/78 0.00 2/8 0.20 6.46e-05 1.62e-12 green2
39 chr2 96930720 96930862 1/5/1/5 0/86 0.00 2/13 0.13 6.26e-04 0.00e+00 green2
40 chr2 102092003 102092105 2/4/4/6 42/22 0.66 62/7 0.90 7.22e-04 1.55e-02 green2
41 chr2 110370972 110371030 1/1/5/5 3/9 0.25 0/99 0.00 4.57e-07 0.00e+00 green2
42 chr2 113298944 113298954 5/5/5/5 72/44 0.62 12/104 0.10 2.48e-16 1.24e-06 green2
43 chr2 131511127 131511264 2/5/2/5 60/3 0.95 16/6 0.73 3.13e-03 9.86e-03 green2
44 chr2 133015879 133016026 5/5/5/5 122/25 0.83 64/34 0.65 1.51e-03 3.72e-02 green2
45 chr2 133015879 133016026 5/5/5/5 122/25 0.83 64/34 0.65 1.51e-03 3.72e-02 green2
46 chr2 158454174 158454357 0/3/3/6 56/8 0.88 1/60 0.02 5.74e-22 2.75e-04 green2
47 chr2 164592812 164592854 5/5/5/5 7/56 0.11 0/67 0.00 5.03e-03 9.70e-07 green2
48 chr2 176972068 176972089 1/1/5/5 4/10 0.29 4/66 0.06 7.82e-03 1.50e-03 green2
49 chr2 189157174 189157315 1/10/1/10 5/118 0.04 4/6 0.40 1.36e-05 2.02e-04 green2
50 chr2 203777824 203778035 1/1/5/5 25/3 0.89 26/96 0.21 7.50e-12 3.39e-02 green2
51 chr2 208890356 208890548 0/4/1/5 1/72 0.01 3/14 0.18 3.36e-03 1.17e-02 green2
52 chr3 47843727 47843913 0/4/2/6 52/6 0.90 0/29 0.00 9.04e-16 2.72e-06 green2
53 chr3 57236039 57236103 4/4/5/5 56/10 0.85 79/2 0.98 5.22e-03 1.32e-03 green2
54 chr3 172167421 172167527 3/5/3/5 18/75 0.19 0/50 0.00 8.77e-04 2.04e-02 green2
55 chr3 196593478 196593584 1/6/1/6 168/3 0.98 11/2 0.85 3.57e-03 1.82e-03 green2
56 chr3 197356598 197356663 3/4/5/6 50/7 0.88 40/28 0.59 3.39e-04 3.32e-03 green2
57 chr3 197687759 197687837 1/5/1/5 0/84 0.00 2/15 0.12 1.50e-03 0.00e+00 green2
58 chr4 1282420 1282497 2/6/2/6 107/1 0.99 22/5 0.81 7.26e-05 5.63e-04 green2
59 chr4 15779428 15779999 0/4/1/5 7/41 0.15 20/1 0.95 2.68e-10 2.85e-02 green2
60 chr4 40751570 40751861 0/4/5/9 46/7 0.87 1/75 0.01 3.24e-23 2.08e-06 green2
61 chr4 57844432 57844567 0/1/4/5 6/15 0.29 0/53 0.00 4.92e-05 1.62e-12 green2
62 chr4 57844432 57844567 0/1/4/5 6/15 0.29 0/53 0.00 4.92e-05 1.62e-12 green2
63 chr4 83821700 83821792 1/1/5/5 4/8 0.33 0/59 0.00 4.99e-06 0.00e+00 green2
64 chr4 119199392 119199551 4/7/4/7 11/85 0.11 21/25 0.46 5.02e-06 8.52e-03 green2
65 chr4 119199392 119199551 4/7/4/7 11/85 0.11 21/25 0.46 5.02e-06 8.52e-03 green2
66 chr4 128801124 128801220 3/6/3/6 89/3 0.97 36/8 0.82 2.83e-03 4.71e-04 green2
67 chr4 166794143 166794329 0/4/1/5 1/49 0.02 6/7 0.46 6.40e-06 1.25e-03 green2
68 chr4 171011502 171011618 3/5/3/5 16/76 0.17 0/40 0.00 4.90e-03 5.18e-03 green2
69 chr4 171011502 171011618 3/5/3/5 16/76 0.17 0/40 0.00 4.90e-03 5.18e-03 green2
70 chr5 891726 891843 5/8/5/8 126/62 0.67 24/52 0.32 1.41e-07 2.00e-06 green2
71 chr5 43484258 43484287 1/1/5/5 2/10 0.17 0/75 0.00 3.48e-04 0.00e+00 green2
72 chr5 137668011 137668198 0/4/1/5 0/81 0.00 6/13 0.32 1.82e-07 1.62e-12 green2
73 chr5 149736763 149736870 5/5/5/5 84/81 0.51 39/84 0.32 1.12e-03 4.70e-02 green2
74 chr5 150326190 150326346 4/4/6/6 23/72 0.24 5/63 0.07 4.90e-03 2.26e-03 green2
75 chr5 156570490 156570642 0/3/3/6 16/32 0.33 0/38 0.00 7.98e-05 4.46e-05 green2
76 chr5 156570490 156570642 0/3/3/6 16/32 0.33 0/38 0.00 7.98e-05 4.46e-05 green2
77 chr5 171434883 171434978 3/6/3/6 79/6 0.93 23/17 0.57 1.84e-06 1.48e-04 green2
78 chr5 179920739 179920792 2/6/2/6 87/16 0.84 11/10 0.52 9.95e-04 1.36e-02 green2
79 chr6 10416337 10416400 1/5/1/5 7/77 0.08 7/9 0.44 1.83e-04 1.30e-02 green2
80 chr6 10416510 10416561 1/5/1/5 8/63 0.11 10/10 0.50 1.23e-04 1.55e-02 green2
81 chr6 17280551 17280765 0/4/1/5 6/38 0.14 7/8 0.47 7.69e-03 3.79e-03 green2
82 chr6 17280551 17280765 0/4/1/5 6/38 0.14 7/8 0.47 7.69e-03 3.79e-03 green2
83 chr6 25727239 25727363 0/4/1/5 91/2 0.98 6/4 0.60 1.20e-06 5.14e-04 green2
84 chr6 26085911 26086002 2/2/5/5 22/7 0.76 78/4 0.95 2.85e-03 1.54e-02 green2
85 chr6 26189809 26189974 1/5/2/6 69/0 1.00 26/12 0.68 7.27e-07 3.71e-07 green2
86 chr6 31164594 31164737 0/4/1/5 23/32 0.42 13/3 0.81 5.49e-03 7.44e-03 green2
87 chr6 31510605 31510691 5/5/5/5 73/32 0.70 44/54 0.45 3.88e-04 3.56e-02 green2
88 chr6 31510605 31510691 5/5/5/5 73/32 0.70 44/54 0.45 3.88e-04 3.56e-02 green2
89 chr6 52860928 52861033 0/3/3/6 20/39 0.34 0/46 0.00 1.14e-05 5.71e-03 green2
90 chr6 74232614 74233015 0/5/3/8 79/28 0.74 30/1 0.97 5.77e-03 2.30e-03 green2
91 chr6 150039895 150040274 0/1/4/5 13/0 1.00 6/70 0.08 6.93e-14 3.07e-03 green2
92 chr6 166797748 166797925 2/6/2/6 118/3 0.98 24/6 0.80 2.85e-04 1.02e-04 green2
93 chr6 167523485 167523778 3/5/3/5 72/12 0.86 58/1 0.98 9.93e-03 2.26e-02 green2
94 chr7 1652215 1652315 5/5/5/5 150/25 0.86 112/5 0.96 5.76e-03 1.35e-03 green2
95 chr7 6866633 6866834 4/4/5/5 84/17 0.83 94/3 0.97 1.34e-03 5.61e-03 green2
96 chr7 11012954 11012994 5/5/5/5 88/10 0.90 43/49 0.47 1.45e-10 2.38e-05 green2
97 chr7 18535499 18535585 1/5/1/5 2/69 0.03 8/5 0.62 1.85e-09 1.05e-04 green2
98 chr7 30519577 30519717 2/5/2/5 58/0 1.00 26/4 0.87 4.42e-03 6.45e-03 green2
99 chr7 42277849 42278021 3/5/3/5 3/72 0.04 8/25 0.24 1.36e-03 1.31e-02 green2
100 chr7 64497888 64498323 0/5/1/6 14/57 0.20 12/0 1.00 2.93e-08 1.96e-02 green2
101 chr7 72993832 72993953 0/1/4/5 12/3 0.80 43/0 1.00 2.60e-03 1.62e-12 green2
102 chr7 89782972 89783232 3/3/5/5 26/11 0.70 63/7 0.90 9.46e-03 2.43e-02 green2
103 chr7 99064759 99064867 4/5/4/5 59/28 0.68 70/3 0.96 7.63e-06 1.70e-02 green2
104 chr7 99064912 99064968 6/6/6/6 79/30 0.72 73/1 0.99 3.62e-06 7.63e-04 green2
105 chr7 100861224 100861379 1/2/8/9 3/21 0.12 0/123 0.00 7.44e-05 4.79e-06 green2
106 chr7 128051049 128051105 0/4/1/5 8/53 0.13 7/5 0.58 3.94e-04 5.73e-03 green2
107 chr7 130130155 130130229 5/5/5/5 87/83 0.51 52/111 0.32 3.63e-04 6.66e-04 green2
108 chr7 130130155 130130229 5/5/5/5 87/83 0.51 52/111 0.32 3.63e-04 6.66e-04 green2
109 chr7 130130970 130131268 0/1/8/9 7/8 0.47 2/102 0.02 8.95e-10 3.39e-05 green2
110 chr7 130130970 130131268 0/1/8/9 7/8 0.47 2/102 0.02 8.95e-10 3.39e-05 green2
111 chr7 140180140 140180278 0/1/4/5 13/2 0.87 76/0 1.00 1.29e-03 1.62e-12 green2
112 chr7 144533515 144533691 0/4/2/6 7/41 0.15 26/0 1.00 1.70e-12 1.76e-03 green2
113 chr7 149196174 149196357 8/8/8/8 174/10 0.95 91/23 0.80 8.11e-05 1.98e-03 green2
114 chr7 153583563 153583764 0/1/5/6 2/8 0.20 0/60 0.00 4.40e-04 0.00e+00 green2
115 chr8 7150704 7150791 1/5/1/5 121/6 0.95 8/4 0.67 2.46e-04 6.08e-04 green2
116 chr8 17105842 17106076 0/4/1/5 27/21 0.56 17/0 1.00 9.17e-04 4.23e-02 green2
117 chr8 42395303 42395427 3/4/6/7 47/19 0.71 88/2 0.98 1.56e-06 8.58e-04 green2
118 chr8 42395303 42395427 3/4/6/7 47/19 0.71 88/2 0.98 1.56e-06 8.58e-04 green2
119 chr8 42395303 42395427 3/4/6/7 47/19 0.71 88/2 0.98 1.56e-06 8.58e-04 green2
120 chr8 42395303 42395427 3/4/6/7 47/19 0.71 88/2 0.98 1.56e-06 8.58e-04 green2
121 chr8 48651788 48651941 0/4/1/5 11/65 0.14 11/2 0.85 6.04e-08 4.82e-02 green2
122 chr8 67836587 67836643 3/5/3/5 17/63 0.21 24/25 0.49 1.03e-03 3.49e-02 green2
123 chr8 72754070 72754118 3/5/3/5 55/5 0.92 23/13 0.64 7.36e-04 2.65e-02 green2
124 chr8 77593495 77593625 6/6/6/6 35/155 0.18 0/95 0.00 7.95e-06 3.69e-03 green2
125 chr8 82599104 82599143 5/5/5/5 83/18 0.82 159/5 0.97 3.34e-05 1.05e-02 green2
126 chr8 82633648 82633931 0/4/1/5 0/64 0.00 6/10 0.38 3.51e-07 1.62e-12 green2
127 chr8 86758266 86758398 3/5/3/5 118/12 0.91 66/20 0.77 4.51e-03 3.99e-02 green2
128 chr8 86776830 86776944 2/2/5/5 24/6 0.80 95/5 0.95 9.62e-03 2.39e-02 green2
129 chr8 126441383 126441519 0/5/1/6 0/58 0.00 2/10 0.17 1.61e-03 0.00e+00 green2
130 chr9 34377544 34377834 4/5/5/6 18/55 0.25 2/50 0.04 1.76e-03 3.08e-02 green2
131 chr9 95056188 95056356 0/1/5/6 6/8 0.43 0/73 0.00 6.76e-09 0.00e+00 green2
132 chr9 95056188 95056356 0/1/5/6 6/8 0.43 0/73 0.00 6.76e-09 0.00e+00 green2
133 chr9 95056188 95056356 0/1/5/6 6/8 0.43 0/73 0.00 6.76e-09 0.00e+00 green2
134 chr9 96108905 96108934 2/5/2/5 1/97 0.01 3/17 0.15 1.64e-03 3.06e-03 green2
135 chr9 116861438 116861488 2/5/2/5 56/6 0.90 15/10 0.60 9.54e-04 3.59e-02 green2
136 chr9 117348864 117349079 0/4/4/8 46/9 0.84 47/1 0.98 1.46e-02 9.26e-04 green2
137 chr9 123965126 123965172 4/4/5/5 40/7 0.85 59/1 0.98 9.83e-03 5.84e-03 green2
138 chr9 140118891 140118944 1/1/5/5 10/2 0.83 91/1 0.99 2.42e-03 2.32e-03 green2
139 chr9 140119063 140119127 1/6/1/6 90/5 0.95 6/4 0.60 1.90e-04 4.62e-04 green2
140 chr10 13140819 13140952 3/3/6/6 32/8 0.80 76/1 0.99 3.17e-04 8.43e-03 green2
141 chr10 23982699 23982878 0/4/1/5 0/61 0.00 6/14 0.30 8.76e-06 1.62e-12 green2
142 chr10 30639238 30639296 1/5/1/5 69/1 0.99 9/3 0.75 4.61e-04 9.63e-04 green2
143 chr10 47083392 47083461 4/6/4/6 2/81 0.02 15/57 0.21 2.51e-04 1.70e-02 green2
144 chr10 74387637 74387713 4/4/5/5 52/3 0.95 69/20 0.78 6.76e-03 5.04e-04 green2
145 chr10 79685531 79685643 3/5/3/5 10/79 0.11 10/21 0.32 6.84e-03 4.31e-02 green2
146 chr10 96161722 96162066 0/4/5/9 58/9 0.87 1/85 0.01 4.89e-27 3.61e-05 green2
147 chr10 102504039 102504137 1/5/1/5 0/66 0.00 2/8 0.20 2.31e-04 0.00e+00 green2
148 chr10 112836336 112836407 1/5/1/5 0/147 0.00 2/8 0.20 4.84e-08 0.00e+00 green2
149 chr10 126481189 126481338 6/9/6/9 7/149 0.04 21/94 0.18 2.32e-04 3.01e-03 green2
150 chr10 135383493 135383690 3/6/3/6 100/9 0.92 22/11 0.67 2.85e-04 3.30e-04 green2
151 chr10 135383493 135383690 3/6/3/6 100/9 0.92 22/11 0.67 2.85e-04 3.30e-04 green2
152 chr11 2890419 2890479 4/6/4/6 47/65 0.42 4/65 0.06 1.49e-07 7.57e-03 green2
153 chr11 8705015 8705186 3/6/3/6 4/97 0.04 8/29 0.22 1.11e-03 7.71e-03 green2
154 chr11 8705015 8705186 3/6/3/6 4/97 0.04 8/29 0.22 1.11e-03 7.71e-03 green2
155 chr11 8987077 8987308 0/3/2/5 35/0 1.00 20/11 0.65 1.13e-04 2.60e-02 green2
156 chr11 18748351 18748602 0/4/1/5 44/4 0.92 8/11 0.42 1.15e-05 4.79e-03 green2
157 chr11 46721447 46721576 1/1/5/5 6/6 0.50 7/62 0.10 5.18e-04 1.40e-02 green2
158 chr11 46721447 46721576 1/1/5/5 6/6 0.50 7/62 0.10 5.18e-04 1.40e-02 green2
159 chr11 47448887 47449132 1/8/1/8 158/19 0.89 5/9 0.36 4.94e-08 2.18e-03 green2
160 chr11 65768891 65769079 0/4/3/7 20/31 0.39 2/56 0.03 3.45e-06 2.52e-03 green2
161 chr11 125494878 125495490 3/17/4/18 32/270 0.11 39/24 0.62 8.08e-21 2.21e-06 green2
162 chr11 125494878 125495490 3/17/4/18 32/270 0.11 39/24 0.62 8.08e-21 2.21e-06 green2
163 chr12 15942826 15942933 4/5/4/5 4/84 0.05 9/41 0.18 9.30e-03 2.08e-02 green2
164 chr12 53572730 53572899 1/1/5/5 14/2 0.88 67/0 1.00 3.40e-03 0.00e+00 green2
165 chr12 56710225 56710552 1/5/1/5 6/77 0.07 7/7 0.50 1.39e-05 9.68e-03 green2
166 chr12 56861883 56861943 4/5/6/7 21/72 0.23 1/125 0.01 1.15e-07 1.65e-03 green2
167 chr12 57872958 57873026 2/5/2/5 16/46 0.26 18/9 0.67 2.65e-04 3.37e-03 green2
168 chr12 58165658 58165765 1/5/1/5 0/85 0.00 2/12 0.14 4.31e-04 0.00e+00 green2
169 chr12 69752582 69752837 6/7/6/7 233/16 0.94 66/18 0.79 8.60e-05 2.18e-03 green2
170 chr12 122109185 122109515 1/4/3/6 46/2 0.96 29/15 0.66 2.21e-04 1.84e-03 green2
171 chr12 122109525 122109658 5/11/5/11 125/34 0.79 32/36 0.47 2.41e-06 6.12e-04 green2
172 chr12 133285881 133286105 2/3/5/6 40/10 0.80 67/2 0.97 2.23e-03 5.08e-03 green2
173 chr13 28492495 28492638 2/3/4/5 14/20 0.41 5/40 0.11 1.96e-03 1.61e-02 green2
174 chr13 32888709 32888881 2/9/2/9 60/143 0.30 31/7 0.82 1.27e-09 4.78e-03 green2
175 chr13 49793255 49793439 2/2/6/6 14/7 0.67 141/15 0.90 1.98e-03 2.11e-03 green2
176 chr13 57727535 57727625 5/5/5/5 150/28 0.84 92/4 0.96 4.46e-03 2.25e-02 green2
177 chr13 57727535 57727625 5/5/5/5 150/28 0.84 92/4 0.96 4.46e-03 2.25e-02 green2
178 chr13 57727535 57727625 5/5/5/5 150/28 0.84 92/4 0.96 4.46e-03 2.25e-02 green2
179 chr13 57727535 57727625 5/5/5/5 150/28 0.84 92/4 0.96 4.46e-03 2.25e-02 green2
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