.gitignore

   1 # Test directory
   2 test/*.wig
   3 test/*.bed
   4 test/log
   5 test/*_run_*
   6 test/subcommandstest_run_*
   7 test/__pycache__
   8 test/*.prof
   9 test/*.tottime
  10 test/*.calls
  11 test/*.cumulative
  12 test/speedtest*
  13 test/macs2*
  14 temp/
  15 other_test/
  16
  17 # cython files
  18 MACS3/IO/BedGraphIO.c
  19 MACS3/IO/Parser.c
  20 MACS3/IO/PeakIO.c
  21 MACS3/IO/BAM.c
  22 MACS3/Signal/BedGraph.c
  23 MACS3/Signal/CallPeakUnit.c
  24 MACS3/Signal/FixWidthTrack.c
  25 MACS3/Signal/HMMR_EM.c
  26 MACS3/Signal/HMMR_HMM.c
  27 MACS3/Signal/HMMR_Signal_Processing.c
  28 MACS3/Signal/PairedEndTrack.c
  29 MACS3/Signal/PeakDetect.c
  30 MACS3/Signal/PeakModel.c
  31 MACS3/Signal/Pileup.c
  32 MACS3/Signal/PileupV2.c
  33 MACS3/Signal/Prob.c
  34 MACS3/Signal/RACollection.c
  35 MACS3/Signal/ReadAlignment.c
  36 MACS3/Signal/Region.c
  37 MACS3/Signal/ScoreTrack.c
  38 MACS3/Signal/Signal.c
  39 MACS3/Signal/SignalProcessing.c
  40 MACS3/Signal/UnitigRACollection.c
  41 MACS3/Signal/VariantStat.c
  42 MACS3/Signal/PeakVariants.c
  43 MACS3/Signal/PosReadsInfo.c
  44
  45 # MacOSX temp
  46 .DS_Store
  47
  48 # EMACS bk and temp file
  49 *~
  50 \#*\#
  51
  52 # Byte-compiled / optimized / DLL files
  53 __pycache__/
  54 *.py[cod]
  55 *$py.class
  56 *.pyc
  57 .pydevproject
  58 .project
  59
  60 # C extensions
  61 *.so
  62
  63 # Distribution / packaging
  64 .Python
  65 build/
  66 develop-eggs/
  67 bld-dir/
  68 dist/
  69 downloads/
  70 eggs/
  71 .eggs/
  72 parts/
  73 sdist/
  74 var/
  75 wheels/
  76 *.egg-info/
  77 .installed.cfg
  78 *.egg
  79 MANIFEST
  80
  81 # PyInstaller
  82 #  Usually these files are written by a python script from a template
  83 #  before PyInstaller builds the exe, so as to inject date/other infos into it.
  84 *.manifest
  85 *.spec
  86
  87 # Installer logs
  88 pip-log.txt
  89 pip-delete-this-directory.txt
  90
  91 # Unit test / coverage reports
  92 htmlcov/
  93 .tox/
  94 .coverage
  95 .coverage.*
  96 .cache
  97 nosetests.xml
  98 coverage.xml
  99 *.cover
 100 .hypothesis/
 101 .pytest_cache/
 102
 103 # Translations
 104 *.mo
 105 *.pot
 106
 107 # Django stuff:
 108 *.log
 109 local_settings.py
 110 db.sqlite3
 111
 112 # Flask stuff:
 113 instance/
 114 .webassets-cache
 115
 116 # Scrapy stuff:
 117 .scrapy
 118
 119 # Sphinx documentation
 120 docs/build/
 121
 122 # PyBuilder
 123 target/
 124
 125 # Jupyter Notebook
 126 .ipynb_checkpoints
 127
 128 # pyenv
 129 .python-version
 130
 131 # celery beat schedule file
 132 celerybeat-schedule
 133
 134 # SageMath parsed files
 135 *.sage.py
 136
 137 # Environments
 138 .env
 139 .venv
 140 env/
 141 venv/
 142 ENV/
 143 env.bak/
 144 venv.bak/
 145
 146 # Spyder project settings
 147 .spyderproject
 148 .spyproject
 149
 150 # Rope project settings
 151 .ropeproject
 152
 153 # mkdocs documentation
 154 /site
 155
 156 # mypy
 157 .mypy_cache/