test/test_Parser.py

   1 #!/usr/bin/env python
   2 # Time-stamp: <2019-12-12 14:42:28 taoliu>
   3
   4 import unittest
   5
   6 from MACS2.IO.Parser import *
   7
   8 class Test_auto_guess ( unittest.TestCase ):
   9
  10     def setUp ( self ):
  11         self.bedfile = "test/tiny.bed.gz"
  12         self.bedpefile = "test/tiny.bedpe.gz"
  13         self.samfile = "test/tiny.sam.gz"
  14         self.bamfile = "test/tiny.bam"
  15
  16     def test_guess_parser_bed ( self ):
  17         p = guess_parser( self.bedfile )
  18         self.assertTrue( p.is_gzipped() )
  19         self.assertTrue( isinstance(p, BEDParser) )
  20
  21     def test_guess_parser_sam ( self ):
  22         p = guess_parser( self.samfile )
  23         self.assertTrue( p.is_gzipped() )
  24         self.assertTrue( isinstance(p, SAMParser) )
  25
  26     def test_guess_parser_bam ( self ):
  27         p = guess_parser( self.bamfile )
  28         self.assertTrue( p.is_gzipped() )
  29         self.assertTrue( isinstance(p, BAMParser) )
  30
  31
  32