pkgs/development/python-modules/dendropy/default.nix

   1 { lib
   2 , buildPythonPackage
   3 , fetchFromGitHub
   4 , pytestCheckHook
   5 , pythonOlder
   6 }:
   7
   8 buildPythonPackage rec {
   9   pname = "dendropy";
  10   version = "4.5.1";
  11   format = "setuptools";
  12
  13   disabled = pythonOlder "3.7";
  14
  15   src = fetchFromGitHub {
  16     owner = "jeetsukumaran";
  17     repo = pname;
  18     rev = "v${version}";
  19     hash = "sha256-FP0+fJkkFtSysPxoHXjyMgF8pPin7aRyzmHe9bH8LlM=";
  20   };
  21
  22   checkInputs = [
  23     pytestCheckHook
  24   ];
  25
  26   disabledTests = [
  27     # FileNotFoundError: [Errno 2] No such file or directory: 'paup'
  28     "test_basic_split_count_with_incorrect_rootings_raises_error"
  29     "test_basic_split_count_with_incorrect_weight_treatment_raises_error"
  30     "test_basic_split_counting_under_different_rootings"
  31     "test_group1"
  32     # AssertionError: 6 != 5
  33     "test_by_num_lineages"
  34     # AttributeError: module 'collections' has no attribute 'Iterable'
  35     "test_findall_multiple"
  36   ];
  37
  38   pythonImportsCheck = [
  39     "dendropy"
  40   ];
  41
  42   meta = with lib; {
  43     description = "Python library for phylogenetic computing";
  44     homepage = "https://dendropy.org/";
  45     license = licenses.bsd3;
  46     maintainers = with maintainers; [ unode ];
  47   };
  48 }