pkgs/development/python-modules/intensity-normalization/default.nix

   1 { lib
   2 , buildPythonPackage
   3 , fetchPypi
   4 , pythonOlder
   5 , pytestCheckHook
   6 , matplotlib
   7 , nibabel
   8 , numpy
   9 , scikit-fuzzy
  10 , scikitimage
  11 , scikit-learn
  12 , scipy
  13 , statsmodels
  14 }:
  15
  16 buildPythonPackage rec {
  17   pname = "intensity-normalization";
  18   version = "2.2.3";
  19   format = "setuptools";
  20
  21   disabled = pythonOlder "3.6";
  22
  23   src = fetchPypi {
  24     pname = "intensity_normalization";
  25     inherit version;
  26     sha256 = "sha256-Yjd4hXmbT87xNKSqc6zkKNisOVhQzQAUZI5wBiI/UBk=";
  27   };
  28
  29   propagatedBuildInputs = [
  30     matplotlib
  31     nibabel
  32     numpy
  33     scikit-fuzzy
  34     scikitimage
  35     scikit-learn
  36     scipy
  37     statsmodels
  38   ];
  39
  40   checkInputs = [
  41     pytestCheckHook
  42   ];
  43
  44   postPatch = ''
  45     substituteInPlace setup.cfg \
  46       --replace "pytest-runner" ""
  47   '';
  48
  49   pythonImportsCheck = [
  50     "intensity_normalization"
  51     "intensity_normalization.normalize"
  52     "intensity_normalization.plot"
  53     "intensity_normalization.util"
  54   ];
  55
  56   meta = with lib; {
  57     homepage = "https://github.com/jcreinhold/intensity-normalization";
  58     description = "MRI intensity normalization tools";
  59     maintainers = with maintainers; [ bcdarwin ];
  60     license = licenses.asl20;
  61     # depends on simpleitk python wrapper which is not packaged yet
  62     broken = true;
  63   };
  64 }