pkgs/development/python-modules/tiledb/default.nix

   1 { lib
   2 , python
   3 , buildPythonPackage
   4 , fetchFromGitHub
   5 , cython
   6 , pybind11
   7 , tiledb
   8 , numpy
   9 , wheel
  10 , isPy3k
  11 , setuptools-scm
  12 , psutil
  13 , pandas
  14 }:
  15
  16 buildPythonPackage rec {
  17   pname = "tiledb";
  18   version = "0.16.3";
  19   format = "setuptools";
  20
  21   src = fetchFromGitHub {
  22     owner = "TileDB-Inc";
  23     repo = "TileDB-Py";
  24     rev = "refs/tags/${version}";
  25     sha256 = "sha256-Tg2MHlLwwcpXoHoflaNWXmXr6s7dg3IJou4PZBahRzc=";
  26   };
  27
  28   nativeBuildInputs = [
  29     cython
  30     pybind11
  31     setuptools-scm
  32   ];
  33
  34   buildInputs = [
  35     tiledb
  36   ];
  37
  38   propagatedBuildInputs = [
  39     numpy
  40     wheel # No idea why but it is listed
  41   ];
  42
  43   checkInputs = [
  44     psutil
  45     # optional
  46     pandas
  47   ];
  48
  49   TILEDB_PATH = tiledb;
  50
  51   SETUPTOOLS_SCM_PRETEND_VERSION = version;
  52
  53   disabled = !isPy3k; # Not bothering with python2 anymore
  54
  55   postPatch = ''
  56     # Hardcode path to shared object
  57     substituteInPlace tiledb/__init__.py --replace \
  58       'os.path.join(lib_dir, lib_name)' 'os.path.join("${tiledb}/lib", lib_name)'
  59
  60     # Disable failing test
  61     substituteInPlace tiledb/tests/test_examples.py --replace \
  62       "test_docs" "dont_test_docs"
  63     # these tests don't always fail
  64     substituteInPlace tiledb/tests/test_libtiledb.py --replace \
  65       "test_varlen_write_int_subarray" "dont_test_varlen_write_int_subarray" \
  66       --replace "test_memory_cleanup" "dont_test_memory_cleanup" \
  67       --replace "test_ctx_thread_cleanup" "dont_test_ctx_thread_cleanup"
  68     substituteInPlace tiledb/tests/test_metadata.py --replace \
  69       "test_metadata_consecutive" "dont_test_metadata_consecutive"
  70   '';
  71
  72   checkPhase = ''
  73     pushd "$TMPDIR"
  74     ${python.interpreter} -m unittest tiledb.tests.all.suite_test
  75     popd
  76   '';
  77   pythonImportsCheck = [ "tiledb" ];
  78
  79   meta = with lib; {
  80     description = "Python interface to the TileDB storage manager";
  81     homepage = "https://github.com/TileDB-Inc/TileDB-Py";
  82     license = licenses.mit;
  83     maintainers = with maintainers; [ fridh ];
  84     # tiledb/core.cc:556:30: error: ‘struct std::array<long unsigned int, 2>’ has no member named ‘second’
  85     broken = true;
  86   };
  87 }