pkgs/applications/science/biology/kallisto/default.nix

   1 { lib, stdenv, fetchFromGitHub, autoconf, cmake, hdf5, zlib, nix-update-script }:
   2
   3 stdenv.mkDerivation rec {
   4   pname = "kallisto";
   5   version = "0.51.1";
   6
   7   src = fetchFromGitHub {
   8     repo = "kallisto";
   9     owner = "pachterlab";
  10     rev = "v${version}";
  11     sha256 = "sha256-hfdeztEyHvuOnLS71oSv8sPqFe2UCX5KlANqrT/Gfx8=";
  12   };
  13
  14   nativeBuildInputs = [ autoconf cmake ];
  15
  16   buildInputs = [ hdf5 zlib ];
  17
  18   cmakeFlags = [ "-DUSE_HDF5=ON" ];
  19
  20   # Parallel build fails in some cases: https://github.com/pachterlab/kallisto/issues/160
  21   enableParallelBuilding = false;
  22
  23   passthru.updateScript = nix-update-script { };
  24
  25   meta = with lib; {
  26     description = "Program for quantifying abundances of transcripts from RNA-Seq data";
  27     mainProgram = "kallisto";
  28     homepage = "https://pachterlab.github.io/kallisto";
  29     license = licenses.bsd2;
  30     platforms = platforms.linux;
  31     maintainers = with maintainers; [ arcadio ];
  32   };
  33 }