pkgs/development/libraries/science/biology/mirtk/default.nix

   1 { lib
   2 , stdenv
   3 , fetchFromGitHub
   4 , cmake
   5 , python3
   6 , boost
   7 , eigen
   8 , libGLU
   9 , fltk
  10 , itk
  11 , vtk
  12 , zlib
  13 , tbb
  14 }:
  15
  16 stdenv.mkDerivation rec {
  17   pname = "mirtk";
  18   version = "unstable-2022-07-22";
  19
  20   src = fetchFromGitHub {
  21     owner = "BioMedIA";
  22     repo = "MIRTK";
  23     rev = "973ce2fe3f9508dec68892dbf97cca39067aa3d6";
  24     hash = "sha256-vKgkDrbyGOcbaYlxys1duC8ZNG0Y2nqh3TtSQ06Ox0Q=";
  25     fetchSubmodules = true;
  26   };
  27
  28   cmakeFlags = [
  29     "-DWITH_VTK=ON"
  30     "-DBUILD_ALL_MODULES=ON"
  31     "-DWITH_TBB=ON"
  32     "-DWITH_ITK=ON"
  33     "-DWITH_GIFTICLIB=ON"
  34     "-DWITH_NIFTILIB=ON"
  35   ];
  36
  37   # tries to download data during configuration
  38   postPatch = ''
  39     substituteInPlace Packages/DrawEM/CMakeLists.txt --replace "include(Atlases.cmake)" ""
  40   '';
  41
  42   # tests don't seem to be maintained and gtest fails to link with BUILD_TESTING=ON;
  43   # unclear if specific to Nixpkgs
  44   doCheck = false;
  45
  46   postInstall = ''
  47     install -Dm644 -t "$out/share/bash-completion/completions/mirtk" share/completion/bash/mirtk
  48   '';
  49
  50   env.NIX_CFLAGS_COMPILE = "-Wno-changes-meaning";
  51
  52   nativeBuildInputs = [ cmake ];
  53   buildInputs = [
  54     boost
  55     eigen
  56     fltk
  57     itk
  58     libGLU
  59     python3
  60     tbb
  61     vtk
  62     zlib
  63   ];
  64
  65   meta = with lib; {
  66     homepage = "https://github.com/BioMedIA/MIRTK";
  67     description = "Medical image registration library and tools";
  68     mainProgram = "mirtk";
  69     maintainers = with maintainers; [ bcdarwin ];
  70     platforms = platforms.linux;
  71     license = licenses.asl20;
  72   };
  73 }