pkgs/development/python-modules/biopandas/default.nix

   1 {
   2   lib,
   3   buildPythonPackage,
   4   fetchFromGitHub,
   5   setuptools,
   6   looseversion,
   7   mmtf-python,
   8   numpy,
   9   pandas,
  10   pytestCheckHook,
  11 }:
  12
  13 buildPythonPackage rec {
  14   pname = "biopandas";
  15   version = "0.5.1";
  16   pyproject = true;
  17
  18   src = fetchFromGitHub {
  19     owner = "BioPandas";
  20     repo = "biopandas";
  21     rev = "refs/tags/v${version}";
  22     hash = "sha256-dUeGjDDz9VA1NrFLGKy0ebaa+MU4c1tHi5YYkAspLRk=";
  23   };
  24
  25   pythonRelaxDeps = [ "looseversion" ];
  26
  27   build-system = [ setuptools ];
  28
  29   dependencies = [
  30     numpy
  31     pandas
  32     mmtf-python
  33     looseversion
  34   ];
  35
  36   nativeCheckInputs = [ pytestCheckHook ];
  37
  38   disabledTests = [
  39     # require network access
  40     "test_mmcif_pdb_conversion"
  41     "test_fetch_pdb"
  42     "test_write_mmtf_bp"
  43     "test_write_mmtf"
  44     "test_b_factor_shift"
  45   ];
  46
  47   pythonImportsCheck = [ "biopandas" ];
  48
  49   meta = {
  50     description = "Working with molecular structures in pandas DataFrames";
  51     homepage = "https://github.com/BioPandas/biopandas";
  52     changelog = "https://github.com/BioPandas/biopandas/releases/tag/${lib.removePrefix "refs/tags/" src.rev}";
  53     license = lib.licenses.bsd3;
  54     maintainers = with lib.maintainers; [ natsukium ];
  55   };
  56 }