pkgs/development/python-modules/mne-python/default.nix

   1 {
   2   lib,
   3   buildPythonPackage,
   4   fetchFromGitHub,
   5   hatchling,
   6   hatch-vcs,
   7   numpy,
   8   scipy,
   9   pytestCheckHook,
  10   pytest-timeout,
  11   matplotlib,
  12   decorator,
  13   jinja2,
  14   pooch,
  15   tqdm,
  16   packaging,
  17   lazy-loader,
  18   h5io,
  19   pymatreader,
  20   pythonOlder,
  21 }:
  22
  23 buildPythonPackage rec {
  24   pname = "mne-python";
  25   version = "1.8.0";
  26   pyproject = true;
  27
  28   disabled = pythonOlder "3.9";
  29
  30   src = fetchFromGitHub {
  31     owner = "mne-tools";
  32     repo = "mne-python";
  33     rev = "refs/tags/v${version}";
  34     hash = "sha256-WPRTX8yB4oP/L5DjSq9M6WOmHJDpQv0sAbuosp7ZGVw=";
  35   };
  36
  37   postPatch = ''
  38     substituteInPlace pyproject.toml  \
  39       --replace-fail "--cov-report=" ""  \
  40       --replace-fail "--cov-branch" ""
  41   '';
  42
  43   build-system = [
  44     hatchling
  45     hatch-vcs
  46   ];
  47
  48   dependencies = [
  49     numpy
  50     scipy
  51     matplotlib
  52     tqdm
  53     pooch
  54     decorator
  55     packaging
  56     jinja2
  57     lazy-loader
  58   ];
  59
  60   optional-dependencies.hdf5 = [
  61     h5io
  62     pymatreader
  63   ];
  64
  65   nativeCheckInputs = [
  66     pytestCheckHook
  67     pytest-timeout
  68   ] ++ lib.flatten (builtins.attrValues optional-dependencies);
  69
  70   preCheck = ''
  71     export HOME=$(mktemp -d)
  72     export MNE_SKIP_TESTING_DATASET_TESTS=true
  73     export MNE_SKIP_NETWORK_TESTS=1
  74   '';
  75
  76   disabledTests = [
  77     # requires qtbot which is unmaintained/not in Nixpkgs:
  78     "test_plotting_scalebars"
  79     # tries to write a datetime object to hdf5, which fails:
  80     "test_hitachi_basic"
  81   ];
  82
  83   pythonImportsCheck = [ "mne" ];
  84
  85   meta = with lib; {
  86     description = "Magnetoencephelography and electroencephalography in Python";
  87     mainProgram = "mne";
  88     homepage = "https://mne.tools";
  89     changelog = "https://mne.tools/stable/changes/v${version}.html";
  90     license = licenses.bsd3;
  91     maintainers = with maintainers; [
  92       bcdarwin
  93       mbalatsko
  94     ];
  95   };
  96 }