pkgs/development/python-modules/tiledb/default.nix

   1 {
   2   lib,
   3   python,
   4   buildPythonPackage,
   5   fetchFromGitHub,
   6   cython,
   7   pybind11,
   8   tiledb,
   9   numpy,
  10   wheel,
  11   isPy3k,
  12   setuptools-scm,
  13   psutil,
  14   pandas,
  15 }:
  16
  17 buildPythonPackage rec {
  18   pname = "tiledb";
  19   version = "0.32.2";
  20   format = "setuptools";
  21
  22   src = fetchFromGitHub {
  23     owner = "TileDB-Inc";
  24     repo = "TileDB-Py";
  25     rev = "refs/tags/${version}";
  26     hash = "sha256-9UgT09KnCqQ7ip7sSp64Yy8Pstf1GCOVYOG0WM2P840=";
  27   };
  28
  29   nativeBuildInputs = [
  30     cython
  31     pybind11
  32     setuptools-scm
  33   ];
  34
  35   buildInputs = [ tiledb ];
  36
  37   propagatedBuildInputs = [
  38     numpy
  39     wheel # No idea why but it is listed
  40   ];
  41
  42   nativeCheckInputs = [
  43     psutil
  44     # optional
  45     pandas
  46   ];
  47
  48   TILEDB_PATH = tiledb;
  49
  50   disabled = !isPy3k; # Not bothering with python2 anymore
  51
  52   postPatch = ''
  53     # Hardcode path to shared object
  54     substituteInPlace tiledb/__init__.py --replace \
  55       'os.path.join(lib_dir, lib_name)' 'os.path.join("${tiledb}/lib", lib_name)'
  56
  57     # Disable failing test
  58     substituteInPlace tiledb/tests/test_examples.py --replace \
  59       "test_docs" "dont_test_docs"
  60     # these tests don't always fail
  61     substituteInPlace tiledb/tests/test_libtiledb.py --replace \
  62       "test_varlen_write_int_subarray" "dont_test_varlen_write_int_subarray" \
  63       --replace "test_memory_cleanup" "dont_test_memory_cleanup" \
  64       --replace "test_ctx_thread_cleanup" "dont_test_ctx_thread_cleanup"
  65     substituteInPlace tiledb/tests/test_metadata.py --replace \
  66       "test_metadata_consecutive" "dont_test_metadata_consecutive"
  67   '';
  68
  69   checkPhase = ''
  70     pushd "$TMPDIR"
  71     ${python.interpreter} -m unittest tiledb.tests.all.suite_test
  72     popd
  73   '';
  74   pythonImportsCheck = [ "tiledb" ];
  75
  76   meta = with lib; {
  77     description = "Python interface to the TileDB storage manager";
  78     homepage = "https://github.com/TileDB-Inc/TileDB-Py";
  79     license = licenses.mit;
  80     # tiledb/core.cc:556:30: error: ‘struct std::array<long unsigned int, 2>’ has no member named ‘second’
  81     broken = true;
  82   };
  83 }