pkgs/development/libraries/libminc/default.nix

   1 { lib, stdenv, fetchFromGitHub, cmake, zlib, netcdf, nifticlib, hdf5 }:
   2
   3 stdenv.mkDerivation rec {
   4   pname   = "libminc";
   5   version = "unstable-2020-07-17";
   6
   7   owner = "BIC-MNI";
   8
   9   src = fetchFromGitHub {
  10     inherit owner;
  11     repo   = pname;
  12     rev    = "ffb5fb234a852ea7e8da8bb2b3b49f67acbe56ca";
  13     sha256 = "0yr4ksghpvxh9zg0a4p7hvln3qirsi08plvjp5kxx2qiyj96zsdm";
  14   };
  15
  16   postPatch = ''
  17     patchShebangs .
  18   '';
  19
  20   nativeBuildInputs = [ cmake ];
  21   buildInputs = [ zlib nifticlib ];
  22   propagatedBuildInputs = [ netcdf hdf5 ];
  23
  24   cmakeFlags = [
  25     "-DLIBMINC_MINC1_SUPPORT=ON"
  26     "-DLIBMINC_BUILD_SHARED_LIBS=ON"
  27     "-DLIBMINC_USE_SYSTEM_NIFTI=ON"
  28   ];
  29
  30   doCheck = !stdenv.isDarwin;
  31   checkPhase = ''
  32     export LD_LIBRARY_PATH="$(pwd)"  # see #22060
  33     ctest -j1 -E 'ezminc_rw_test' --output-on-failure
  34     # -j1: see https://github.com/BIC-MNI/libminc/issues/110
  35     # ezminc_rw_test: can't find libminc_io.so.5.2.0
  36   '';
  37
  38   meta = with lib; {
  39     homepage = "https://github.com/BIC-MNI/libminc";
  40     description = "Medical imaging library based on HDF5";
  41     maintainers = with maintainers; [ bcdarwin ];
  42     platforms = platforms.unix;
  43     license = licenses.free;
  44   };
  45 }