pkgs/development/libraries/science/biology/elastix/default.nix

   1 { lib, stdenv, fetchFromGitHub, fetchpatch, cmake, itk, python3, Cocoa }:
   2
   3 stdenv.mkDerivation rec {
   4   pname    = "elastix";
   5   version = "5.0.1";
   6
   7   src = fetchFromGitHub {
   8     owner  = "SuperElastix";
   9     repo   = pname;
  10     rev    = version;
  11     sha256 = "1mx8kkak2d3ibfrxrh8jkmh2zkdlgl9h578wiw3617zcwaa97bxw";
  12   };
  13
  14   patches = [
  15     (fetchpatch {
  16       name = "install-executables.patch";  # https://github.com/SuperElastix/elastix/issues/305
  17       url = "https://github.com/SuperElastix/elastix/commit/8e26cdc0d66f6030c7be085fdc424d84d4fc7546.patch";
  18       sha256 = "12y9wbpi9jlarnw6fk4iby97jxvx5g4daq9zqblbcmn51r134bj5";
  19     })
  20   ];
  21
  22   nativeBuildInputs = [ cmake python3 ];
  23   buildInputs = [ itk ] ++ lib.optionals stdenv.isDarwin [ Cocoa ];
  24
  25   doCheck = !stdenv.isDarwin;  # usual dynamic linker issues
  26
  27   preCheck = "
  28     export LD_LIBRARY_PATH=$(pwd)/bin
  29   ";
  30
  31   meta = with lib; {
  32     homepage = "http://elastix.isi.uu.nl/";
  33     description = "Image registration toolkit based on ITK";
  34     maintainers = with maintainers; [ bcdarwin ];
  35     platforms = platforms.x86_64;  # libitkpng linker issues with ITK 5.1
  36     license = licenses.asl20;
  37   };
  38 }