pkgs/by-name/hi/hisat2/package.nix

   1 {lib, stdenv, fetchFromGitHub, unzip, which, python3, perl}:
   2
   3 stdenv.mkDerivation rec {
   4   pname = "hisat2";
   5   version = "2.2.1";
   6
   7   src = fetchFromGitHub {
   8     owner = "DaehwanKimLab";
   9     repo = "hisat2";
  10     rev = "v${version}";
  11     sha256 = "0lmzdhzjkvxw7n5w40pbv5fgzd4cz0f9pxczswn3d4cr0k10k754";
  12   };
  13
  14   nativeBuildInputs = [ unzip which ];
  15   buildInputs = [ python3 perl ];
  16
  17   installPhase = ''
  18     mkdir -p $out/bin
  19     cp hisat2 \
  20        hisat2-inspect-l \
  21        hisat2-build-s \
  22        hisat2-align-l \
  23        hisat2-inspect \
  24        hisat2-align-s \
  25        hisat2-inspect-s \
  26        hisat2-build-l \
  27        hisat2-build \
  28        extract_exons.py \
  29        extract_splice_sites.py \
  30        hisat2_extract_exons.py \
  31        hisat2_extract_snps_haplotypes_UCSC.py \
  32        hisat2_extract_snps_haplotypes_VCF.py \
  33        hisat2_extract_splice_sites.py \
  34        hisat2_simulate_reads.py \
  35        $out/bin
  36   '';
  37
  38   meta = with lib; {
  39     description = "Graph based aligner";
  40     license = licenses.gpl3Plus;
  41     homepage = "https://daehwankimlab.github.io/hisat2/";
  42     maintainers = with maintainers; [ jbedo ];
  43     platforms = [ "x86_64-linux" "i686-linux" ];
  44   };
  45
  46 }